barSeed - Barley Seed Development Database

Probe CUST_8440_PI390587928

Source Contig U35_8080

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8440_PI390587928	Hv_44K_v2	AATTGTGTTATGGATGACTAGGAACCTAACAGACGACATTCCTGGGTGGGGAGTTCTCTT	246	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364565	2880	2e-24	1801 - 1860	100	60 / 60	plus	ABC17624 ABC49799
MLOC	MLOC_74633.2	2080	2e-24	725 - 784	100	60 / 60	minus	ABC17624 ABC49799
JLOC1	JLOC1_49752.1	2493	8e-25	1205 - 1264	100	60 / 60	plus
Harvest21	ABC17624	534	3e-25	247 - 306	100	60 / 60	plus	ABC17624
Harvest35	U35_8080	534	3e-25	247 - 306	100	60 / 60	plus

Contig Sequence (534 bp)

>U35_8080 534 Hv_44K_v2
GATGTGGTCGGCGTACTTTCCGGAGAAAGAGCCCATCACCTTCAGCTCGTGGATGAGCTT
TGGCCTCCCAGTGGCGCTGGCCATGTTCTTGGCGCTCTGGGTCACGCTCTGCTTCATGTA
CTGTTCCAACAACACCGGAAAGGCGCTCTCTGCCTACCTCGACGGAAGCCACCTCAGAAG
GGAGCTCAGCTTGTTAGGTCCAATGGCTTTCGCGGAGAAGATGGTCTTGGCTGTCTTTGG
GGGTTTAATTGTGTTATGGATGACTAGGAACCTAACAGACGACATTCCTGGGTGGGGAGT
TCTCTTCCACAATCAAGTTGGGGATGGAACAGTCACGATCATGATGGCCACGCTGCTGTT
CATAATCCCGAGCGGGAAGAGCGAGGGCGAGAAGCTCATGGACTGGGACAAGTGCAGGAA
GCTGCAGTGGAACATCGTGCTCCTCCTCGGCGCGGGCTTCGCGATCGCCGACGGCTTCAG
GACCAGCGGCCTGACCGGCATCTNTCGGACGGCTCAGGTTCCCCGAGGGGGGCC

Homology of Contig U35_8080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39370.1	549	4e-103	protein\|citrate transporter, putative, expressed
Brachypodium v1_2	Bradi4g33550.1	541	3e-101
Arabidopsis v10	AT5G47560.1	540	4e-83	\| Symbols: ATTDT, ATSDAT, TDT \| tonoplast dicarboxylate transporter \| chr5:19287895-19290347 REVERSE LENGTH=540