barSeed - Barley Seed Development Database

Probe CUST_8438_PI390587928

Source Contig U35_8082

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8438_PI390587928	Hv_44K_v2	TCCTCTTGAGAACTCTCCACTTGCAAAGCTCAGAAAAAATGGTAGACCGGTTCAAGCTAG	649	GeneList: blue MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.864	1.053	1.118	1.192	0.378	0.630
Raw	42.366	33.426	35.109	58.440	5.793	11.789

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252898.1	2029	2e-24	590 - 649	100	60 / 60	plus	ABC11836 ABC51485
MLOC	MLOC_80687.2	2017	2e-24	1380 - 1439	100	60 / 60	minus	ABC11836 ABC51485
MLOC	MLOC_80687.1	2213	2e-24	1448 - 1507	100	60 / 60	minus	ABC11836 ABC51485
JLOC1	JLOC1_53727.2	2120	8e-25	562 - 621	100	60 / 60	plus
JLOC1	JLOC1_53727.1	2187	8e-25	629 - 688	100	60 / 60	plus
Harvest21	ABC17667	759	3e-25	650 - 709	100	60 / 60	plus
Harvest35	U35_8082	759	3e-25	650 - 709	100	60 / 60	plus

Contig Sequence (759 bp)

>U35_8082 759 Hv_44K_v2
CAACAAGGTAGGAGCATTTGGCGCCCGCCCCTATAAATACACCCGCCTCCGGCTCAACAT
GCCGCCTCCTGCCCGCGCCCGCGCACTCCACCCCCACTACCCCGCCTCCTCCTCCTCCTG
CCCGGTCCGGCCCGGCGACGACGACGACTGCTCCCCCGCACGGTGCGAGTTCATTTGAGT
AATAGTTGACCAAAGCAGGGTATAATGAAGAGAGTGTCATCGCATGTCTCCATTGCCTCA
GAGGCAGAGATCAATTTTGATCTCTCGCGCTTACTAATTGACAAGCCAAAGTTCACACTG
GAGCGTAAGAGGTCATTTGATGAACAGTCATGGAGCGAGCTCTCACATCGGCATAATGAT
GGCTTTGATAGTGTGGCGCAATCACCTGCATTCCGCAATGGTTTTGAGTCACCATTCTCA
ACCGGAACACACTTCGGTGAGCCAAGTGGACCGCACCCCCTTGTGAATGAGGCATGGGAG
GCACTCAGGAAATCCGTAGTGCATTTTCGTGGCCAACCTGTGGGTACTGTTGCTGCGGTA
GATCATGCATCTGAGGAGGTGCTCAATTATGATCAGGTTTTTGTACGGGATTTTGTTCCT
AGTGCATTGGCTTTCCTAATGAACAACGAGCCTGAAATAGTGAAGAACTTCCTCTTGAGA
ACTCTCCACTTGCAAAGCTCAGAAAAAATGGTAGACCGGTTCAAGCTAGGAGCAGGAGCA
ATGCCTGCAAGTTTCAAGGTGGACCGTAATGTAAACAGG

Homology of Contig U35_8082 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g07440.4	452	8e-105	protein\|plant neutral invertase domain containing protein, expressed
Brachypodium v1_2	Bradi4g24470.2	465	2e-115
Arabidopsis v10	AT4G09510.1	558	3e-60	\| Symbols: CINV2 \| cytosolic invertase 2 \| chr4:6021312-6023310 REVERSE LENGTH=558