barSeed - Barley Seed Development Database

Probe CUST_8425_PI390587928

Source Contig U35_8095

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8425_PI390587928	Hv_44K_v2	ATTTACATGATGAGCTGAAAAATGCCGCAGCCGATAATATTTGGTTGCTGGTAATTCAAA	627	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.190	1.404	1.267	0.817	0.288	0.297
Raw	1621.413	3073.337	2357.380	2467.527	296.467	329.204

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71070.1	1028	7e-23	130 - 186	100	57 / 57	minus	None
JLOC1	JLOC1_47202.1	1019	4e-23	114 - 170	100	57 / 57	minus
Harvest35	U35_8095	700	3e-25	628 - 687	100	60 / 60	plus

Contig Sequence (700 bp)

>U35_8095 700 Hv_44K_v2
CATCCAAAGAAGGACATAAGAGACACCTCAGAATATGAGATTTTCAGACGGGAGGGCAAG
CGGAGATCGTTGAAAGATCTTGCTGCTCAAGAACTTTGTGTTAAGATACAACAGCAAGAG
CACTGCCCGATTGAGGACGCTCGGGCAGCAATGTTCATTTACAAGAAGCACAAGAAAAGT
TGGGAGAAGAACAAGAAAGATCAATTCAGGTTCAAGAACAAGCAGAAGAAGCGAGGCAAT
AAGAAATCTGCTGAAGGCAGCGAGAAGGACCCCAATGTCCCAATAGTTCTACTGTAGGAA
ATATAGATGTAGGGGGCTAGGGCCAAGCAGTGTCGTTCTTAACATGGATTTCACGACGCC
AAAGGGTGTGTCGTGTGGGAATTTCAGATGGTCCCTGTGAAGATTTCAAGATCAGCACGC
CAACCTGGGAATTTCTCCGGACGAACCATGAACTTCGGTACCATGCTGGACGGGTGGATG
GATGGCTATGCCGTGATTATATCTGTTGATTCGGATTTCTCTGTATCACATCTGTTTGAG
GGATTGATTGAAAATTGCGTGGTTGATCATTCCTCACATCACATTGTGATGAAACTTCGC
ACATGCGTGCAAGGTTCTGTAACAAGTATTTACATGATGAGCTGAAAAATGCCGCAGCCG
ATAATATTTGGTTGCTGGTAATTCAAAAAAAAAAAAAAAA

Homology of Contig U35_8095 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None