barSeed - Barley Seed Development Database

Probe CUST_8411_PI390587928

Source Contig U35_13111

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8411_PI390587928	Hv_44K_v2	TCAAAAAAGAAATCACGAAAGAAGGCCAAGGCTGATGCATCAAGCAGTGAAGATGCCGAA	1150	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78237.1	1300	2e-24	351 - 410	100	60 / 60	minus	None
JLOC1	JLOC1_52144.1	1286	8e-25	665 - 724	100	60 / 60	plus
Harvest21	ABC25909	1265	3e-25	1151 - 1210	100	60 / 60	plus
Harvest35	U35_13111	1265	3e-25	1151 - 1210	100	60 / 60	plus

Contig Sequence (1265 bp)

>U35_13111 1265 Hv_44K_v2
TTTTATCTCACCTTCTGCCGAAGAGCAATCTTCACGGACAGCTGCTGTGAAAGCAGTCTC
CGATGTTGTCAAGCATATATGGCCTCATTGCAAGGTGGAAGTCTTTGGATCTTTCAGAAC
AGGGCTTTATCTACCAACAAGTGATATTGATGTTGTAGTATTCGATACCAGGGCTAAGAC
TCCTCAAGGCCTCTATGCTCTTGCGAAAGCATTATCTCAAAAAGGTGTTGCCAAAAAGAT
ACAGGTAATAGCAAAGGCCCGCGTGCCAATTGTGAAATTCGTGGAAAGAATTAGCGGAAT
ACCTTTTGACATCAGGTTAGCCCCCCTCCCCCTCTTACTAAGTTGTGCAAGCGTTTACTG
TAATGATCTTTTTTTCCTTCCCCAGCTTTGATATTGATGGTGGACCACAAGCAGCGGACT
TCATCAAGGATGCCATCAAGAAGATGCCTGCTTTAAGACCTTTGTGTATGATTCTGAAGG
TTTTCCTTCATCAAAGAGAGCTCAATGAGGTCTATACCGGTGGGGGGTTGGGTCATATGC
TCTTCTCACAATGCTGATCACACATTTACAGTTGATCTGGGGAGCGAAAGATATGCTGGG
CTATCGACAGTTGAAGGAACATAATTTGGGAATTCTTTTGGTAAAGTTTTTTGACTTTTA
TGGACGCAAGTTGAACTATACGGATGTTGGAATATCCTGCAACTCTGCAAGAACCTTTTT
CTTGAAGAGTGATAATGACTTTGTGAATCTTGACCGGCCACATCTTATAGCCATTCAAGA
TCCCATGGTACCTGATAACGATATTGGGAAGAATTCCTTCAACTACTTCAAGGTGAAATC
AGCATTTTCAAAGGCTTATTCTGTGTTAACTGATCCCAAGTTGATTACGGGCTTGGGACC
AGACAGGAGCATTCTGGGCACCATTGTCAGACCGGATTCGGTGCTCCTCGACCGTAAAGG
CTGGAACACTGATGGTGCGTTAGCTGACATGTTAGCAGAGCCCTGGGAACCGTTGCCCCA
ACAGTTTGACAGTGAGAATGGCGCATTGTATAACTGGCATGCGTTAGACGATGATGAACC
ACTGCCCAGAAATACTCAACCCGAGGACACTAGTTCGTCACCATTGGGGAAACGCAAGTC
CTCCTCCAAGTCAAAAAAGAAATCACGAAAGAAGGCCAAGGCTGATGCATCAAGCAGTGA
AGATGCCGAAGAGGGGTCCAGAAACGGAAGAGAGCAGAGTCGGNGTAAAGGGTCGGCACC
GAGTG

Homology of Contig U35_13111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g48210.1	631	3e-165	protein\|PAP/25A associated domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g46260.1	620	0.0
Arabidopsis v10	AT5G53770.1	530	1e-93	Nucleotidyltransferase family protein \| chr5:21826733-21829858 FORWARD LENGTH=530