barSeed - Barley Seed Development Database

Probe CUST_8406_PI390587928

Source Contig U35_13116

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8406_PI390587928	Hv_44K_v2	TAAGGTAAGGTATGTTATGAGATGTATATTTGGGGACCCCAAGAATGCACCCCCTCCTCT	861	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80597.1	1134	2e-23	1009 - 1066	100	58 / 58	minus	ABC12221
MLOC	MLOC_80597.2	1022	2e-23	911 - 968	100	58 / 58	minus	ABC12221
JLOC1	JLOC1_53666.1	1041	1e-23	70 - 127	100	58 / 58	plus
Harvest21	ABC28449	721	3e-25	584 - 643	100	60 / 60	plus
Harvest35	U35_13116	999	3e-25	862 - 921	100	60 / 60	plus

Contig Sequence (999 bp)

>U35_13116 999 Hv_44K_v2
GGAGCCGCCCTGAACTAACTATGTTGCTTATAGAAAGGGTCTTGGAGTTGTTTGCAACAA
AAAGGGTGGATTTGGCATGGATGACTTTGTTATTGAGTTCTTCGGGGAGGTTTACCCTTC
TTGGAGATGGTATGAAAAGCAAGATGGTATTAAACATATACAAAACAACAGCGAAGATCA
AGCTCCTGAGTTTTACAACATTATGTTAGAAAGACCAAAGGGGGACCGTGATGGATATGA
CTTGGTTTTTGTTGATGCTATGCACAAGGCTAACTACGCGAGCAGAATCTGTCATTCATG
CAACCCCAACTGTGAAGCAAAAGTGACTGCTGTGGATGGTCAATACCAGATTGGAGTCTA
CACTGTTAGGCCGATTGCAGAAGGCGAGGAAATCACTTTTGATTACAACTCTGTAACTGA
GAGTAAGGAAGAGCATGAAGCATCGGTTTGCCTCTGTGGAAGTCAAGTATGCCGGGGCAG
CTATTTAAATTTTTCTGGAGAGGGAGCTTTCGAGAAGGTGTTAATGGAATTCCACGGTGT
GCTTGACCGACACAGTTTGCTGCTACAGGCTTGCGAAGCAAACACTGTCTCCCAACAAGA
CTTGATTGACTTGGGTAGAGCTGGTCTTGGTACCTGTTTGCTTGCTGGTTTGCCTGGCTG
GCTTGTTGCTTACACAGCCCACCTGGTGCGGTTTATATTCTTCGAGAGGCAGAAACTTCC
TAATGAGATCTTCAAGCACAACATGGAAGAGAAGCGGCAGTTTTTTACAGATATTAGTAT
GGATTCCGAGAGGAATGATGCTGAAGTTCAGGCTGAGGGTGTATTAAATTCTAGATTACA
GCATTTAACTCATACACTTGATAAGGTAAGGTATGTTATGAGATGTATATTTGGGGACCC
CAAGAATGCACCCCCTCCTCTGGTGAGGCTTACTGGGAGAAGTCTAGTGTCTGCTATCTG
GAAAGGGGAAGGCTCATTAGTTGATGAGCTCCTTCAGTC

Homology of Contig U35_13116 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08210.1	936	0.0	protein\|SET domain containing protein, expressed
Brachypodium v1_2	Bradi3g15410.1	2244	0.0
Arabidopsis v10	AT4G15180.1	2335	3e-169	\| Symbols: SDG2, ATXR3 \| SET domain protein 2 \| chr4:8651999-8662178 FORWARD LENGTH=2335