barSeed - Barley Seed Development Database

Probe CUST_8392_PI390587928

Source Contig U35_20214

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8392_PI390587928	Hv_44K_v2	CCCTTCCACAGTGTCGACTTCAGAAGATCAGAGCATATTTTTGTACTTTCCTAAAACATA	1166	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13454.1	1156	2e-24	87 - 146	100	60 / 60	minus	ABC18140 ABC29412
JLOC1	JLOC1_9113.1	3009	8e-25	2924 - 2983	100	60 / 60	plus
Harvest35	U35_20214	1306	3e-25	1167 - 1226	100	60 / 60	plus

Contig Sequence (1306 bp)

>U35_20214 1306 Hv_44K_v2
TACGTTATGATAACCTGAAGATCTATTATCCGAACAGTGTGCTGGCCACCAAGCCGATTT
TTAATTTCTACAGGAGTCCTGATATGGGAGAAGGAATTGACTTCTCTATTCATGTTGCCA
CGCCGGTGGAAAAACTGGCTCTCATGAAGGAAAGAATACTACGTTACGTTGACGGTAAGA
AGGAGCATTGGTACCCGGGTGCGATGGTGGTCCTCCGAGATGTAGATGAGACCAACAAGC
TCAAGGTATCCATATGGCTCCGGCACACACTCAACTTCCAGGACATGGGCATGAGGTTTG
TGAGGAGGGAACTCGTGCTCCAAGAGATGATCAGAGTACTGAAGGACCTCGACATCGAGT
ACCGGATGTTGCCGCTTGACGTGAACGTGCGAAATGTGCCCCCTCTTCAGTCCACAAGGA
TGCCGACGACATGGAACTATGCCTGAAGCGGCAATCGCCAGGGCCAGCTCCAGGGCCACC
CTGCTACAACAGCCTGGTAGCGGCAACTATAGCGGATAGCCATTAGCTGTTTAGCGTGCC
TGCTGTGATGAGTGTGTTCTGTAGTATATATAAAGCTTCGGTACACTTGATGATAGGCAA
TACAGATTGTGGCCGCTGGAAATGTTGAAAGCAGCCTGCGGTTGTAGCTGAAACTTGCTT
GTTTGTTGAAAGCACGCTGCTTGGCCCAGCTCTGAATATCTTCTGGTAATGGAACGAGAC
CACAGAGCTTCAGCCGTCTCCTCGACGCACCGTAGGCCAGCCTCGGGACGGAAACCCGAC
GCCGTTTCGCCTCTTGCCCCGAGCCTTGACCCGGCAATTCTGACGGCGACTGCTCATGGC
GAACGGTGCGAGCGCGACGGTGCGAGAAGGAAGGGCGCATTCGCGCTACTGTGAAGTCGC
ATTCGTGGGCGTTGCGGTGGATCGTCTTCTGAAGCATCTTACGCAAAGGCACGCCGCAGT
CTGGTGGTACCCACGAAGCACCGCCGGCTAATTCTTGGTTCGAGTCGTGATCGTGTGCCA
TCCGGTCCCATGGAAGCTGCCGATGCCAGCTGAGGGAGTTCACGATCTGGGCTTTAGCCG
GTGTTGTAGGAGTAACTGGTCTGGTGGTGTTCGAGGAGGGGAGAAATACGGATGTGGGTT
TCCGCTGTATCTGGATTTCTCAAGTTCCCTTCCACAGTGTCGACTTCAGAAGATCAGAGC
ATATTTTTGTACTTTCCTAAAACATAATAACTTATATAATTTCTGTAAACTGAACTCCTT
AGAATTTGAGGTTTTAGATTTATGTGCACCAAAAAAAAAAAAAAAA

Homology of Contig U35_20214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44770.1	975	2e-86	protein\|uncharacterized mscS family protein, putative, expressed
Brachypodium v1_2	Bradi3g51250.1	960	3e-89
Arabidopsis v10	None