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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_8385_PI390587928Hv_44K_v2ACGCTGCGTCATAGACAAGAAGTTTTGATCATGGTGAAAATTCCTCAAATTTTTGTTGCT831GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.8862.5811.2190.7260.2450.331
Raw 5383.8037589.4573117.1003018.235348.102513.408



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_69811.16739e-22619 - 67310055 / 55plus ABC13053
JLOC1JLOC1_46287.18248e-25630 - 68910060 / 60plus
Harvest21ABC130539163e-25832 - 89110060 / 60plusABC13053
Harvest35U35_202219163e-25832 - 89110060 / 60plus



Contig Sequence (916 bp)

>U35_20221 916 Hv_44K_v2
GCGCGACCCTGCCCTCTTTCCCTCCCACTCCCACTCCCGCCGCCGCCGCCGCCTCTTCCA
CCAGCGCACGATGGACCAGACGCCGCAGCGCCGCCGCCGGAGACGCGCCGAGGCCGCCCC
CTCCTCCGACGCCGCCCCGGACGCGGCGGGGTACAGCCTCGACGAGCCGACCTTGGCGGA
GAAGCTCGCGGCGCTGGACCCGCCCGCCGACGCGGCGGGTGTCGCCGCCGTGGTGCCCCC
CAGCGCGGACTCCGTCCACGTCCTGCTCAGGCAGGCCCTGCAGGCCGACGACCGCGCCGC
GCTGCTGGGCTGCCTCTACAACCGAGACGGCAAGGTTATCGTGAAGTCGGTATCACTTCT
GACCCCAGCAGACGCTGTGAAGTTCCTCAAATCCATGGTATCGCTCATGCAGTCTAGGGG
TTCAGTACTGGTTTGCTTGCTCCCATGGCTACAAGCTCTGCTCGGCCGACACATGAGCAG
CATAGTGTCTCAGGAGTCCTCTCTGCTGCTGCTCAACTCGCTCTATCAGCTGATTGACGC
ACGAACATCGACCTTCGCGTCGTTGCTCAAGCTGTCTACCTGCCTAGATTGTCATTTCAG
CGAGATCTGCGATGACGGATCCGATGAAGAAGAGGGAGGCCCTCCGCTTATCTACGAGGA
CATGGATTCCGACGAGGAAGATTCTGAAGTTGATGATGCTATGGAAACCGAGGACAAGGG
GACTGACAAGGAAGAGTCTGAAGTCGATGATGAGTGAGAGAGATCACAGCATTTGAACTC
TGGTTGCTAGTAACTGTACTGTAACTCTGGTTGCTTGTAACTGTTTGAGACACGCTGCGT
CATAGACAAGAAGTTTTGATCATGGTGAAAATTCCTCAAATTTTTGTTGCTAAAAAAACA
AAAAAAAAAAAAAAAA



Homology of Contig U35_20221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None