barSeed - Barley Seed Development Database

Probe CUST_8381_PI390587928

Source Contig U35_20225

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8381_PI390587928	Hv_44K_v2	AACACGGTTTGAAGCTGCTGTTGCGCAAAACTGGACTATCCGAGATAAGTGCAAAGTTTG	131	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373995	2330	7e-23	1439 - 1498	98	59 / 60	plus	ABC12804 ABC23073
MLOC	MLOC_64403.2	900	7e-23	260 - 319	98	59 / 60	plus	ABC12804
MLOC	MLOC_64403.1	1144	7e-23	349 - 408	98	59 / 60	plus	ABC12804
JLOC1	JLOC1_42292.1	1522	4e-23	282 - 341	98	59 / 60	plus
Harvest21	ABC12804	1109	1e-23	193 - 252	98	59 / 60	plus	ABC12804
Harvest35	U35_20225	223	3e-25	132 - 191	100	60 / 60	plus
Harvest35	U35_29449	512	1e-23	193 - 252	98	59 / 60	plus

Contig Sequence (223 bp)

>U35_20225 223 Hv_44K_v2
TATAAAGGGTCTGGTGACAGCTGCTGTAAATTAACACTTCAATTCATTGACAGGGCTTCA
AGCGGATTTAACAGAGAGTTTGTAATCACATTGCCTGAGCTGGTTGGCTTCCCCGATTTT
CTTGTGGAAAGAACACGGTTTGAAGCTGCTGTTGCGCAAAACTGGACTATCCGAGATAAG
TGCAAAGTTTGGTGGGCTGATGGTGGTGCAGAGGGGGGAGGAA

Homology of Contig U35_20225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None