barSeed - Barley Seed Development Database

Probe CUST_8380_PI390587928

Source Contig U35_20226

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8380_PI390587928	Hv_44K_v2	TTGGATTTGTACAGTCGTCAGTCAATAAAGAACAAGGCAAATAATCGATCCATTGGATAG	1355	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373995	2330	7e-23	2271 - 2330	98	59 / 60	plus	ABC12804 ABC23073
JLOC1	JLOC1_42292.1	1522	8e-25	1118 - 1177	100	60 / 60	plus
Harvest21	ABC12804	1109	3e-25	1029 - 1088	100	60 / 60	plus	ABC12804
Harvest35	U35_20226	1436	3e-25	1356 - 1415	100	60 / 60	plus

Contig Sequence (1436 bp)

>U35_20226 1436 Hv_44K_v2
CCCTCTCCAGAATGCTCGAGCGGCCGCTGGGACCCCCAACCCGTGCATATGATGATTTCT
ATAACTTGTTCATATGGATATCTGCAACATGTTGATGCATACTTACAAGATTGACCATGT
CATCGCACTTAAAATTAGCTTTCTGCAAACTTACCTATTAGTGCTATATCATGCATTACT
ATTACCTCATGCCAGATCATGGATTGCTTGCCAGTACATTCAAAGTACTCATTGGCTTGC
CACTGGTTATTTTATTGGCCAGGCATGAGAGAATAGGATATGTCGAAGATTATCTTGGTG
ATGTACATGCGAGCTAGGATGCTTCCCAGTCAGAATGCGTGTAGGGTTATGGCAGATGAC
ATGGGCTCATGCTATTGATGAAGTATTTATGCTGCAACTTATATGAAGACTTGGCCATGG
AGGCCATATCCGAATCAAACGATGCGTAATGGATATAAGACTCTTGTTATTCAGTTTATG
TGTGTTCAGTAAGCATTGATCTCTGGGATCACTATGCACGTTCATTCGGTGATCACGACT
TATAAGTCGGGATCCCCACACAAAGCTATTATTTCCTATCTTCACCATGGGTTTTCACAA
GCTTTGGTTTGTATTTTTTTATTAGTAAGCGTGTGAAGCATTTCCTAGTAGTGTGTGAGC
GGCCGCTAGTCCATGGGAAAAATATGCCATACAATACAAGACTGACGGTTCAGAACATTT
ACATAGCCCCTGGGAGCTCTATGACATTGATACCCCATTGGTTCCATGGAAACATCCACA
TATTGATTCCAGTGTCAGGAATAAATTGTTATCAGCAATGACCACTTTACAGAACAAGTC
TCGCAGAAACCAGGATTGCTATGGTGTCCTGAAGTTGGATACTGTTGCAGTAAAATCAGA
GTTCATAAACAGGTTTCCTGTCCAGTTTTCCATGGAGGTAATCAGGACAAGACTGGAAAA
TGGTTACTACAGAACCGTGGAGGCTCTCCAACATGATGCCATGGTAATGCTTGCCAATGC
TGAGAGTTACTTTTCAAAGAGCGCCGACATGAGCAATAAGCTTCTCATGCTATCCGAGTG
GGTCGATGATCACATCCTATCACTTTAGGGGAAGGTGGTATTCTTCCTTCTTCTTGAGGA
GAATTAGCCAGCCTCAGCGAATGAGAAGGTTCTTCAGACCGAAAGCATAGTCTTGTTAGA
GGAATGGGCCAAAGTAAAGTAGTTGGCTGGTTGGGAGGAGATGCAAATTGATCTTTACTA
ACAAGTGTCCCCATAGTTCTAAAAGAAAAGAAAAATTAGAAAGAGAAGAGATGCTGGCGT
TGTGAAATCTGCTAGAAAAATGCTCTACCAGATTATTGGATTTGTACAGTCGTCAGTCAA
TAAAGAACAAGGCAAATAATCGATCCATTGGATAGAATAAAAAAAAAAAAAAAAAA

Homology of Contig U35_20226 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19340.1	1627	3e-56	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi5g22017.1	1618	4e-64
Arabidopsis v10	None