barSeed - Barley Seed Development Database

Probe CUST_8379_PI390587928

Source Contig U35_20227

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8379_PI390587928	Hv_44K_v2	ATCTGTTATCTGTTGTGGATTTGACAGTTTCTACGCCCTTTCACAAGTGCAATTATTATT	1842	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71794.2	2418	2e-24	2337 - 2396	100	60 / 60	plus	ABC12896
JLOC1	JLOC1_47738.3	2348	8e-25	2252 - 2311	100	60 / 60	plus
JLOC1	JLOC1_47738.2	2406	8e-25	2310 - 2369	100	60 / 60	plus
JLOC1	JLOC1_47738.1	2415	8e-25	2319 - 2378	100	60 / 60	plus
Harvest21	ABC12896	996	3e-25	937 - 996	100	60 / 60	plus	ABC12896
Harvest35	U35_20227	1902	3e-25	1843 - 1902	100	60 / 60	plus

Contig Sequence (1902 bp)

>U35_20227 1902 Hv_44K_v2
TACAGTACACTTAACTTAACCGACCTTGTCAACAAGATATATGGCAGTCTGCAAGAGAAT
CTGTTTGAAGGGTTAGAATTACATTCTACAAGAGATGGTTCGGAGGCTGCTTGCAAGATT
CTGAAGGTTATAGGTTCAGGTAACACCACAAGCTATGAGGTGGGCTGGATTGGTCAAGAC
AATGCAATTACCAGCACTTCAGTTCTCAGAGCTGACGATCTAATTCGCAAGAAAGCGCCC
TGTGGTCGTAATATGCTCAAGATTTTTATCAGGGAATCAACATCACAAAACTTTCCGTGG
ATTGTGCATATGTATCTTGCAAAGAAATATGGCATACCCACTGAGCCTCCAAAAGACATG
ATTAATGGTGAAGGATTGCCCAAAGCAAGGAAAAGACTAGCGAATGGGACTGCAGAAGAT
GCCAGCAAAAGGTCAAAGAAAGATGAGGAACAAGTAGTGCCAGTTAAATACCCAATCGAT
GATCTTTTAGTAAAGCCGGTGGCAGATGACCCTGTTTTGTCAAAGAGATGCCCACCATCC
ACAGATTTCAAAGTGCCTGCAAGTTCTGTGGGAGATCTCCTGATGGTCTGGGATTTCTGC
ATGTCTTTTGGGAGGCTTTTATGCTTGTCGCCATTTTCCCTATCAGATCTGGAGAACGCA
ATTTGCCACAAAGAAACCAATCTTGTTCTTCTTGTGGAAATACACACTGCACTTTTCAAT
TTGCTTATTAACGACGAGGGTGAATATTTTGAGTTTATCCAGGACAGGAACAGAAATTTA
AAGGTATCTTTAGTCACCTGGAAGGAGTATCTATGTGATTTCATGGAAATGACAAGTATC
TCCAGTAACATATCAACAGTACGAAGGGGTCACTATGGTCTTGTTCCCACTAGGCTGAAA
CTTGAAATTCTACGGGAAATGGTAGATGAAGCCATTGCAACTACTGCTGTAAGAGAGAAA
TTAGACGAACGCTTTGATCAGCAACAAGCACTTGCAGCAGAAAAGAGAGAGATTGCTAGA
AAGAATAAGGAAGAGCAGAAGCTGATCGTGGAAGTGGCAACAGAAAAGGAAATGAATCAG
AAAAATGCTGTACAGGACGGCAACGAGAATGTTAATGGCCAGCTTGTGGCAAAAGAAGGG
AAGGAGAGGAAAAACGCTCCCCCCAGCAAAATGGGAGATGCGAAATTGCATCTGGGGAGG
CATCTTGAGAAAGAACTACTGGACCAATCAGTACGAACTAGTCCTCTTGGAAAAGACAGA
TTCTATAACAGGTATTGGTTTTTTAGGCGTGAAGGAAGGCTTTTTGTCGAGAATGCAGAT
TCCAAAGAGTGGGGGTACTATAGCACCAAGGAAGAGCTTGATGCGCTCATTGGGTCTTTA
AACATTAAAGGGATAAGGGAGAGAGCACTCAAAGAACAGCTTGACAAGTTCTACGACAAG
ATAAGAAGTGCTGTGGAGAAGAGATTGAAGGAGGTGACACATCAGTTGTTAGTTGAAGAG
GCTGTATTGCGGCGTTCTTCTCGTGTACATGCTCATCCAAAGGACAGCCCCTCTACATCA
TTCCTTGAGTATGTCAACACATGGAAGCCTATTACAAAGAGAAACAAAAGCAAAGAAGAT
CGAGCTACTTAGTTGATAGATGGGGAGATAGGCCACTTTTCCTATGGCCTATTTATTGTC
TCAACTCTGAACCGTAGTAGGGGTTCATTTCGTGCGCCAAATTTTCGGAAACTAAGGCAG
TCGAACTGGAGCTGCATGTAATTTGACCCCGGATAGGGTTGATGTTTTCTTTCTGTAGTT
GGTACTGAAGTGGAGATGCTGAAAACCAATCGTTAGCTAGGAATCTGTTATCTGTTGTGG
ATTTGACAGTTTCTACGCCCTTTCACAAGTGCAATTATTATT

Homology of Contig U35_20227 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35100.1	618	0.0	protein\|DDT domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g10777.1	642	0.0
Arabidopsis v10	AT5G08630.1	723	1e-90	DDT domain-containing protein \| chr5:2798575-2802138 REVERSE LENGTH=723