barSeed - Barley Seed Development Database

Probe CUST_836_PI390587928

Source Contig U35_46826

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_836_PI390587928	Hv_44K_v2	ACCTCGACATCCTGAAGCAGCTCAAGGTCATCAGCCACCGATTCCGTCGGTTCATCGTCA	377	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.662	0.781	2.090	2.006	1.346	0.944
Raw	3.482	6.424	21.700	34.516	6.989	5.323

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_46203.1	2198	6e-21	929 - 987	97	57 / 59	plus
Harvest21	ABC47421	506	3e-25	378 - 437	100	60 / 60	plus
Harvest35	U35_46826	506	3e-25	378 - 437	100	60 / 60	plus

Contig Sequence (506 bp)

>U35_46826 506 Hv_44K_v2
CTGCTCTACCTCGAGGGAGCTACGCACGAACAGCGACCGCTTCAGGCTCAACTACACGGT
CCGCCTCGCCTTCTCCTTCCGCCTCCTCGCCTCCCTCGTCGCGCCCTGCTTCGCCGCCGA
GGCCGCATACAAGGCCTGGTGGTACGCCACCTCCGCCGACCGCGTCCCCTTCTTCGCCAA
CGACCTCCTCAGCGACGTCCTCGCCTGCTCCCTCGAGATGGCCTACTGGATGTACCGCAG
CGCCATCTACCTCCTCACCTGCGTCCTCTTCCGCCTCATCTGCCACCTCCAGGGCCTCCG
CCTCGAGGACTTCGCCGGCTCCCTGCTCGTCTAGGTGGAGGAGGGCAGGATGGGGGTGGA
GCGCGTTCTCAGGGAGCACCTCGACATCCTGAAGCAGCTCAAGGTCATCAGCCACCGATT
CCGTCGGTTCATCGTCACCGCGCTGCTCATCGGCACCGACAGCCAGTTCGCCTCCGTGCT
CCTCACCACGCGTCACGACTCCATCG

Homology of Contig U35_46826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g42850.1	453	4e-80	protein\|extracellular ligand-gated ion channel, putative, expressed
Brachypodium v1_2	Bradi1g35460.2	451	2e-86
Arabidopsis v10	None