barSeed - Barley Seed Development Database

Probe CUST_8369_PI390587928

Source Contig U35_32207

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8369_PI390587928	Hv_44K_v2	CATGGCGGTTACACAGTTTGAAGCTGCTGATGCACGGCGGTGCTTTCCATGCTGGGATGA	398	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.077	1.021	1.710	1.107	0.706	0.727
Raw	197.199	259.524	424.168	390.825	96.415	110.685

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360995	3068	2e-24	510 - 569	100	60 / 60	plus	ABC05018
MLOC	MLOC_21535.1	2372	2e-24	1712 - 1771	100	60 / 60	minus	ABC05018
JLOC1	JLOC1_14937.1	2338	8e-25	562 - 621	100	60 / 60	plus
Harvest21	ABC05018	2954	3e-25	436 - 495	100	60 / 60	plus	ABC05018
Harvest21	ABC37679	526	1e-23	131 - 190	98	59 / 60	plus
Harvest21	ABC28241	757	1e-23	343 - 402	98	59 / 60	plus
Harvest35	U35_32207	458	3e-25	399 - 458	100	60 / 60	plus
Harvest35	U35_15524	2670	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (458 bp)

>U35_32207 458 Hv_44K_v2
AGAAGCTACTGTGTTCAGAAAAATCTACCGCGGCCTTCAACCCCTCCGCTCCAGATCTGC
CCGCCGACAATGGCGGAGTCGCCGGAGCAGTTCAGGGGCCAGTCCCGCCTCCCCCGATTC
GCCGAGCCCCTACGCTACGACCTCGCCGTGTCCGCGCCCACCCGCTTCCTCGTCCTCAAC
GCCGCCGAGCTCGCCGTCGACCGGTCCTCCATCCGCTTCCAGGACTGGGCGCCGACGGAG
GTGGTGCAGTTCGAGGAGGATGAGATCCTCGTCCTCGGGTTCGGCCGGGAGCTGCCCCTC
GGCGAGGGCGTGCTCGCCATGGACTTCACCGGCACCCTCAACGACCAGATGAGGGGCTTC
TACAGGAGCAAGTATGAGTACAACGGGGAGGCAAGAAACATGGCGGTTACACAGTTTGAA
GCTGCTGATGCACGGCGGTGCTTTCCATGCTGGGATGA

Homology of Contig U35_32207 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g30810.1	876	1e-66	protein\|puromycin-sensitive aminopeptidase, putative, expressed
Brachypodium v1_2	Bradi3g35350.1	874	1e-69
Arabidopsis v10	None