barSeed - Barley Seed Development Database

Probe CUST_8360_PI390587928

Source Contig U35_20236

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8360_PI390587928	Hv_44K_v2	TTTTGAGGACAGAGTTTGTAGGCCTTGTACATGTTAGTACAACACTAACCGTTCTTTTTT	781	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.100	0.220	0.725	1.736	1.518	1.518
Raw	7.373	26.617	74.820	278.503	86.779	93.937

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4668.2	2737	2e-24	163 - 222	100	60 / 60	minus	ABC16065
MLOC	MLOC_4668.1	3138	2e-24	245 - 304	100	60 / 60	minus	ABC16065
MLOC	AK362960	2898	7e-23	2612 - 2671	98	59 / 60	plus	ABC16065
JLOC1	JLOC1_2936.1	3306	8e-25	2905 - 2964	100	60 / 60	plus
Harvest21	ABC16065	1129	3e-25	782 - 841	100	60 / 60	plus	ABC16065
Harvest35	U35_20236	1131	3e-25	782 - 841	100	60 / 60	plus

Contig Sequence (1131 bp)

>U35_20236 1131 Hv_44K_v2
GAGTTGCAGGGCTAAGATTCCATCCATGGATGAAGAAGCATTCCATCTTATCACGTCCTT
CCTCAGTTCAGAGCTAAAAACTGAAGCTTTGTTGGTACTCCATGAACTGATTCGACACCT
GAGTCATCGGCAATCCCGTCAGATGGCCTCTATTGTCACTCCTCCAGTTTTGGCAATATT
GGCGTCTGAAGATATTGAGGGCCTTGAGCTTCCCTTGAAGATTATCTGTGACCTTTCATC
CGGTGCTGATGTGAAGTCACAGCTGATTTCACTGGGAATAATCTCGAAGCTGGTTCCCAT
TTTGGCAGAAGGAAGCTTCGTGGAGTGCTGTTTGGAGATTTTGCGGAACTTATGCGAAGT
GGAAGAAGCTATGGCGCTTATTACCAGAACAGACCGATGCCTTGGTTCCATTGCAGAGTA
TCTAGACACAGGAAGCCCTAAAGAGCGAGAACTTGCAGTGATAATCCTTCTGGCAATATG
TTCCCGTAGCGTGGAGGATTGCTCCCACGTGATGAAGGAGGGCGTAATCCCCGCCCTCGT
GGACCTGTCGGTGAACGGGATTGATGAAGCGAAGAGTTGCTCGTTCAAGCTACTGAATCT
TCTTAGGGACATGAGGCAAAGCGAGATCAACAACTCGTGTTCACAGGAAGTGGCGGCCGC
CGAGGTGATAGTAGAGGATCCTCCCACGGAGAGCCCGATTCACAGGCGGCCAGCATCGAA
GTCATCTGGGTTTTTCCAAAGGAAGCTGAACATTTTCTCGAAACCTCGGTCCCTGACGCT
GTTTTGAGGACAGAGTTTGTAGGCCTTGTACATGTTAGTACAACACTAACCGTTCTTTTT
TTGCTTGGCATATATAGATGGTAAAAGTAGCAGTTGTATTGCCCGGATGAAATGCTTGGT
GAGATGATCTTTTTCATCCTCGAGTCTTTCGGTATATATTGGTTAGCAGATTTACCAGTC
TTGCAGATTGTAGATGTGTGTGTATAAGAAGTAAAGAAAGACAGCTGGTATAGTTCCATC
CATGCCTGCCTTCAGTGGCAAAAAGTTTGCCTTTTTGTACCCTACTGTTCCACAGTAGCT
GGAAAGCCCCAAATGAATGAAGATTTTACTCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20236 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47670.2	771	2e-113	protein\|bg55, putative, expressed
Brachypodium v1_2	Bradi3g52800.1	775	4e-123
Arabidopsis v10	None