- Probe CUST_8358_PI390587928
- Source Contig U35_20238
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8358_PI390587928 | Hv_44K_v2 | TTTTGCATGTTGAAGCTGTCATTGTTTGTCTGCCACGAGGGCTGCAATGTGGAAACGTTT | 284 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.829 | 1.994 | 1.179 | 0.779 | 0.350 | 0.443 |
| Raw | 703.813 | 1209.256 | 623.057 | 664.369 | 100.625 | 141.813 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_27830.1 | 847 | 2e-24 | 585 - 644 | 100 | 60 / 60 | plus | ABC13088 |
| JLOC1 | JLOC1_18740.1 | 884 | 8e-25 | 715 - 774 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC13088 | 396 | 3e-25 | 285 - 344 | 100 | 60 / 60 | plus | ABC13088 |
| Harvest35 | U35_20238 | 396 | 3e-25 | 285 - 344 | 100 | 60 / 60 | plus |
Contig Sequence (396 bp)
>U35_20238 396 Hv_44K_v2 GGGCTGCAGGAATTCGGCACGAGGTGAGTGTGACCACAAGCCAGAGCATTCAATCCTCAG CAAGCTTCCTAGCAGCCAGCCTTGATTACTATCCGAATTCACCGTGGACAACATGCAGGA TTTGCTGCAGTACTTGATGTCCTGCGCTATATGAAAGGGCTGAAGTCGAGCTAGGCACTG TTGGCCATCTAAGTGAGATAAGCACCAGCGTTGGAGACTGTATAGACTTATTTTGCAGAG CCCTCTAAGGTCTAAGCGCCCTGTTTCGAGTAAAAGTAGGTTCTTTTTGCATGTTGAAGC TGTCATTGTTTGTCTGCCACGAGGGCTGCAATGTGGAAACGTTTGGCACAAAAAAAAAGC AAGCGATTTTTGTGTGCTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_20238 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |