barSeed - Barley Seed Development Database

Probe CUST_8355_PI390587928

Source Contig U35_32215

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8355_PI390587928	Hv_44K_v2	TGGCTTCTGCAAAGCCACACTTTACGAAAGAGGGGCCGGAGGAGGTGGAGTTCACTCACT	333	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60371.4	3158	2e-24	317 - 376	100	60 / 60	plus	None
MLOC	MLOC_60371.2	3052	7e-23	2784 - 2843	98	59 / 60	minus	None
MLOC	MLOC_60371.1	3530	7e-23	2798 - 2857	98	59 / 60	minus	None
MLOC	MLOC_60371.5	3109	7e-23	2910 - 2969	98	59 / 60	minus	None
MLOC	MLOC_60371.7	2555	7e-23	2336 - 2395	98	59 / 60	minus	None
MLOC	MLOC_60371.6	3080	7e-23	2738 - 2797	98	59 / 60	minus	None
MLOC	MLOC_60371.3	3346	7e-23	2784 - 2843	98	59 / 60	minus	None
JLOC1	JLOC1_39356.2	3036	4e-23	182 - 241	98	59 / 60	plus
JLOC1	JLOC1_39356.1	3033	4e-23	179 - 238	98	59 / 60	plus
Harvest35	U35_32215	438	3e-25	334 - 393	100	60 / 60	plus

Contig Sequence (438 bp)

>U35_32215 438 Hv_44K_v2
TCGAGCTCTGTTGGCCTACTGAAGCCCGAAAAATTGTCACACCGGAAAAGGGGGAGGCGA
TGCTGCGCGGCGGCGCCGGACCGCGTGGAGGAGGAGGATCTGCGGCGGCGAGGCCCCCTC
GCTGCCCCCACCCCCGCCCCGCGCCGCGCCGAGCGCGGGTGCCGGCCGCCGCGCCGGGGA
TGGAGGATCTGGTGGCGTCTTCCGTCGAGGAATCCTCTTTCACATTTGAGTTCTAGAGAG
GGTCCAAGAGGGCGAGGAAGGCGATGCCGCTGTCAGAGCCGCACAGAGGCAAAGACAACT
GTGGGGCGGCAGTCAACATCAGCAACCAAAGCATGGCTTCTGCAAAGCCACACTTTACGA
AAGAGGGGCCGGAGGAGGTGGAGTTCACTCACTGCGCGCCCAGCATCGTCGCGAGGCTGA
TGGGCCTTGACACCGTGC

Homology of Contig U35_32215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None