barSeed - Barley Seed Development Database

Probe CUST_8354_PI390587928

Source Contig U35_32216

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8354_PI390587928	Hv_44K_v2	TGGGTTTGTTTTCTGGGCCATCTTTAATACCAACTCCGATTCGAGCCATTCAGATTGGCT	371	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11124.1	4692	2e-24	3136 - 3195	100	60 / 60	plus	None
JLOC1	JLOC1_7330.1	4512	8e-25	2956 - 3015	100	60 / 60	plus
Harvest35	U35_32216	533	3e-25	372 - 431	100	60 / 60	plus

Contig Sequence (533 bp)

>U35_32216 533 Hv_44K_v2
TCGAGCACTGTTGGCCTACTATAATACAACTGCAGAAATGGAACCAGTTATACTTGGATT
CGATCAGGGTGTACAGGTTGAAATTCCCGTGAATAATGAGCTTGAATTAAGTTCTGTGAA
GAGCACTGAACTGGAAGTTGGTGTACACTTGGGCGTCGTGAAGCAAGAGTTGAGATGTGG
TTCAGTTGATCCTTATGACATTGTTACGCTTCAAGGCCTTGATCAAACAAATGCCTTGGC
CGATGAATCTAATGTTGATCCATCCGGTAGCACAGCTGTGTCAAGTTCCAAGTTACCTCA
GGCATCTTTTGCCCCCCCTATTGATTCATCAACATCAGCAGTAATTGACCAGAACGAAGT
TCCTGTTAGTCTGGGTTTGTTTTCTGGGCCATCTTTAATACCAACTCCGATTCGAGCCAT
TCAGATTGGCTCCATGCAGATGCCGATCCATCTCCACAATCAGATTAACCCATCCCTGGC
TCAACTGCTCCCTTCATCAGCTCCTTTATTCAAGTTTGGTCAGTTGAGGCATG

Homology of Contig U35_32216 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g60500.2	2281	3e-57
Arabidopsis v10	None