barSeed - Barley Seed Development Database

Probe CUST_8347_PI390587928

Source Contig U35_20245

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8347_PI390587928	Hv_44K_v2	TGACCTGAGTGATATGCTCCCGCCTATCTCATTGGCTCCATTCATGGATGAAATCAAAAG	1701	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369767	2455	2e-24	1719 - 1778	100	60 / 60	plus	ABC18223
MLOC	MLOC_11777.2	2249	2e-24	1798 - 1857	100	60 / 60	plus	None
JLOC1	JLOC1_7841.2	2542	8e-25	1676 - 1735	100	60 / 60	plus
JLOC1	JLOC1_7841.1	2576	8e-25	1710 - 1769	100	60 / 60	plus
Harvest21	ABC12542	1768	3e-25	1702 - 1761	100	60 / 60	plus
Harvest35	U35_20245	1768	3e-25	1702 - 1761	100	60 / 60	plus

Contig Sequence (1768 bp)

>U35_20245 1768 Hv_44K_v2
GCCGCCGACCAAATTCACCCACGAGCTCCCGCGCGGGTTCATGTCCATCTCCCCTACAGA
ATCCACCAGAGGATCCCACCCGCCCGCTCCGCGCGCCTCGAACCCTAGCCCCAGCCATGG
CACCGCCCCTCGCCGCGGCAGTCGCTCTTCCACTCGGGCCTCTGCCGCCGCCCTTGGCGC
TGGCATGGACGGCGCAAGCACCGACTCAGTGGGTTTTATTGGACAATCTGTTGATACATC
CCAAGCGGTAGTTGGATTTAGAATATCTGGTGAAGAGGATGATCCATATGCCCAAGAGGT
TAGTGATGTTTCTGTATCCCAGTCTTCTGGACAGGGGAGTTTGGGTCTCACAGTGCACAG
TGGCGGCTCAGTTCAGGCAGATGTTCAGAGACTTGAGTTGGCGGGGTCCCTGGAGATTCA
CCATCATTCTGATGGACTTCAGGGTAATGGAGCTCTGATGGCTTCTAGAAAGAATCAGGC
TGTGAATGCAAATTATCTTCTGAATTTCCAGTATGATCCTATTTCTCGACTGCAGCCTCA
TGGCCCTAGAACATATCCACCGAGAAGGCAAAGGAAGATTAAGCCTTACAACAAGGACTT
GTTCCTCCAAGCAAATTTTAAGTTTGTTGTGTTGGATACTGGAAATTATCAGATTGATTC
AATGGATCCTGATAAGATGCTCCAGTGGGAAGATATCATCTGTGTAAGATATTGTAGCCC
TTCTGAGGTGCGATGTCCCATTTGCTTGGAAAGCCCGCTGTGCCCACAGATTACATCATG
CGGTCATATATATTGCTTTCCATGCATTTTGCATTATTTACTAATGGGTAAAGAGGATTA
CAAGGGTGACTGCTGGAAGAAGTGCCCACTGTGTTTCATGATGATATCAGCAAAAGAGTT
GACCACCATTTTTGTCACTCAACTTCAGCATTTCCATATTGGTGACAATGTGACCTTCGC
ACTTCTGGGGCGGTCAAAAAATTCGCTCACTCCTTCTCTTAGGAATTCGTCTAGTGAAAT
TTCTTCTATAGACGAAGATCCTTGCAATGTTTTCTCCAAGTTCATTTTGACATCTGATGT
TGAGCTCTCCGTTAGAGGGGCAAAATCAGATCTCAGTAATTGGTTGCAGATGGCTGACTT
GGGCCTTGTTGATGACTTGGAGAAACTTCCATATGTTTCCGCTGCTTTGGAGCAACTGGA
AGAAAGGATGAAATATTGGTCTGAGTTCAGATATTACAGTAGCAGCCCCCCTCTAAAAAA
TAGCTTCTCTTCTATCTCCAGTAACAAATTAAAGAACTTTGGTAATCCGAAGACTTCACA
TGCGAACAGTGGGCATAAACTCTCCCCTGTTTCAGATGGAGATATTATCACCGGTGTTTC
AGGGCTTTCTGTTTCACCCCGAAAGATTAACTCCAATAAGGGAGTGCCACAAAAAATGGA
AGAGAGACGCGCTGCATCGGTTGATTCAAATGAACAAGACTTGTACACATTTTACCAGGT
GATTGATGGTCAGCACCTAATTCTTCATCCATTGAACATGAAATGCCTTCTTAACCATTT
TGGAAATTCTGATACGCTTCCACCAAGAGTGACTGGAAAAATCTTGGAGTTGGAAACTAT
AACACAGTCTGAGGCTTCAAGAAAACGCTACCGCTTCTTAAGCCACTTCTCATTAACTAC
AACGTTCCAGTTCTGCGAAATTGACCTGAGTGATATGCTCCCGCCTATCTCATTGGCTCC
ATTCATGGATGAAATCAAAAGGCGCGAG

Homology of Contig U35_20245 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g31150.1	745	0.0	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi3g44347.3	643	0.0
Arabidopsis v10	AT3G26730.1	772	2e-140	RING/U-box superfamily protein \| chr3:9823770-9827270 FORWARD LENGTH=772