barSeed - Barley Seed Development Database

Probe CUST_8342_PI390587928

Source Contig U35_32220

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8342_PI390587928	Hv_44K_v2	AGCATTGATGGGCTCGGCGACCGCCTAATTCCACCGTCCATTTTCAAACCGAAAACCGGG	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63204.5	3350	2e-24	15 - 74	100	60 / 60	plus	None
MLOC	MLOC_63204.3	1636	2e-24	43 - 102	100	60 / 60	plus	None
MLOC	MLOC_63204.4	1632	2e-24	43 - 102	100	60 / 60	plus	None
MLOC	MLOC_63204.2	3537	2e-24	140 - 199	100	60 / 60	plus	None
MLOC	MLOC_63204.1	3581	2e-24	241 - 300	100	60 / 60	plus	None
JLOC1	JLOC1_41392.1	3558	8e-25	217 - 276	100	60 / 60	plus
Harvest35	U35_32220	401	3e-25	12 - 71	100	60 / 60	plus

Contig Sequence (401 bp)

>U35_32220 401 Hv_44K_v2
GAGAGAGGGAGAGCATTGATGGGCTCGGCGACCGCCTAATTCCACCGTCCATTTTCAAAC
CGAAAACCGGGCGCCTCGGATGGCGGAGGCGGCGTCGCTCTTCTCGCTCTCCGCGGCCGC
CGTGGTGGAGGACGTGCTGAGGGAGCACGGCTGCCGCCTCAGCGACCGCGACCTCGCCTC
GCGCAGGACGGGGGAAGCCGCGGCCAGGCGGAACGAGGCGGCGGGGTGGCTGCGCCGCAC
GGTGGGGGCCGTCGCCGGGCGGGACCTGCCGGAGGAGCCGTCGGAGGAGGAGTTCCGCCT
CGGCCTCCGCAACGGCCAGATCCTCTGCAGCGCGCTCAACAGGGTCCACCCAGGCGCTGT
CCAGAATGTGGTCACGGCGGACTCGGTCGACGGCGCCGCGC

Homology of Contig U35_32220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None