barSeed - Barley Seed Development Database

Probe CUST_8339_PI390587928

Source Contig U35_32225

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8339_PI390587928	Hv_44K_v2	GAGGATTCGAACATTAATCCATGCTATTCCCCACCCGTCCCTGTAAATCCCAAGCTCCTG	71	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5856.6	8032	2e-24	103 - 162	100	60 / 60	plus	ABC14798
MLOC	MLOC_5856.4	7747	2e-24	103 - 162	100	60 / 60	plus	ABC14798
MLOC	MLOC_5856.5	7738	2e-24	103 - 162	100	60 / 60	plus	ABC14798
MLOC	MLOC_5856.3	2375	2e-24	104 - 163	100	60 / 60	plus	None
MLOC	MLOC_5856.2	3384	2e-24	111 - 170	100	60 / 60	plus	ABC14798
MLOC	MLOC_5856.1	6183	2e-24	111 - 170	100	60 / 60	plus	ABC14798
JLOC1	JLOC1_3793.4	2401	8e-25	96 - 155	100	60 / 60	plus
JLOC1	JLOC1_3793.3	2380	8e-25	96 - 155	100	60 / 60	plus
JLOC1	JLOC1_3793.2	2995	8e-25	96 - 155	100	60 / 60	plus
JLOC1	JLOC1_3793.1	2832	8e-25	96 - 155	100	60 / 60	plus
Harvest35	U35_32225	471	3e-25	72 - 131	100	60 / 60	plus

Contig Sequence (471 bp)

>U35_32225 471 Hv_44K_v2
CGCATCGAACTCCTCCTTTCCGCCGCCGCCGCCGCCGCCGCCGCAGCCATTCATGGCGAG
GCGCCGCCGGGGAGGATTCGAACATTAATCCATGCTATTCCCCACCCGTCCCTGTAAATC
CCAAGCTCCTGCCGCCGCGGCCGCCGTAGCTGCTATCTCCAGCCTCCGCCTCTCCTCCTC
ATCGCCGGCGCCTATTCCTCCCCCGTATCACGACGACAACCCATTCGCCTCACTACTCAC
TTCCGATCCCCCTCCGCCGGATCCGCTCCGCCAGGTTCTCGCCACCGGAGACGTCCACGG
CGCGCTGCGCGGCCTCCCGCGCCTCGCTCGCCAGCTGTTCCGGTGGGCGGAGGGCACCCC
GCACGGCTTCCCCCGCTCCGCCTCCGCATTCGCCGCCGTCCTTGTCCCGCTCGCTGAGGC
CAGCCACAACCGCGCCGCTTATCCCGTCTCCCTCCGCGCCATCCAGGCCGG

Homology of Contig U35_32225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None