barSeed - Barley Seed Development Database

Probe CUST_8338_PI390587928

Source Contig U35_32227

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8338_PI390587928	Hv_44K_v2	CGTACTCGGCACCGACGACTCCCCCATCCCCATCACCGGTTACTATACTCCATGCACACA	123	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20377.4	2297	7e-23	167 - 226	98	59 / 60	plus	ABC15306
MLOC	MLOC_20377.1	1143	7e-23	116 - 175	98	59 / 60	plus	None
MLOC	MLOC_20377.3	3290	7e-23	113 - 172	98	59 / 60	plus	ABC15306
MLOC	MLOC_20377.2	1164	7e-23	113 - 172	98	59 / 60	plus	None
JLOC1	JLOC1_14116.6	3687	4e-23	106 - 165	98	59 / 60	plus
JLOC1	JLOC1_14116.5	2649	4e-23	106 - 165	98	59 / 60	plus
JLOC1	JLOC1_14116.4	3273	4e-23	106 - 165	98	59 / 60	plus
JLOC1	JLOC1_14116.3	3303	4e-23	106 - 165	98	59 / 60	plus
JLOC1	JLOC1_14116.2	2679	4e-23	106 - 165	98	59 / 60	plus
JLOC1	JLOC1_14116.1	3657	4e-23	106 - 165	98	59 / 60	plus
Harvest35	U35_32227	183	3e-25	124 - 183	100	60 / 60	plus

Contig Sequence (183 bp)

>U35_32227 183 Hv_44K_v2
ACGGGAGATGGCGCCGAAGGCGGAGGTGCGGCCGCGGCCGCTGCCGCGGCCGCTGATGGT
AGAGGCCATCACTAGCTGCGTCGAGACGCCGTTTGGGGAGGCCCTCCGCCTACTCAAGCT
CGACGTACTCGGCACCGACGACTCCCCCATCCCCATCACCGGTTACTATACTCCATGCAC
ACA

Homology of Contig U35_32227 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None