barSeed - Barley Seed Development Database

Probe CUST_8336_PI390587928

Source Contig U35_44201

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8336_PI390587928	Hv_44K_v2	ACATTCCGACCTATATTTTCATGCCGGAGTCCTTAGTGGAGCAAGTTTCTCACATACCCA	302	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359405	2944	7e-23	2493 - 2552	98	59 / 60	plus	None
MLOC	AK368770	1888	7e-23	343 - 402	98	59 / 60	plus	ABC20753
MLOC	MLOC_70142.3	1627	7e-23	99 - 158	98	59 / 60	plus	ABC20753
MLOC	MLOC_70142.1	1925	7e-23	722 - 781	98	59 / 60	plus	ABC20753
MLOC	MLOC_70142.4	961	7e-23	20 - 79	98	59 / 60	plus	ABC20753
MLOC	MLOC_70142.2	3564	7e-23	967 - 1026	98	59 / 60	plus	ABC20753
JLOC1	JLOC1_46533.2	3431	4e-23	843 - 902	98	59 / 60	plus
JLOC1	JLOC1_46533.1	3663	4e-23	843 - 902	98	59 / 60	plus
Harvest21	ABC41752	378	3e-25	303 - 362	100	60 / 60	plus
Harvest35	U35_44201	378	3e-25	303 - 362	100	60 / 60	plus

Contig Sequence (378 bp)

>U35_44201 378 Hv_44K_v2
CAGCCCTCCTCCGGGCCGGGAGCTCGCCGCACCGCCGCTCCTCCTCGCTGCCGGGAGCGG
AGGCGAGGGCAGGGGAGGGGAGGAATCATATCCCTCCTGCCGGGCCGCCGACGCCCGTCG
TGGCTCGCTCGCTCGCTCGCTCGCTCCGACGCTCGTTGCGTGCGCACTGCCACGCCACGG
CCCAGCGCCTTCTTCCTTTCGGCGCCGTCCACCGCGACTCCTTCAAGCGATTCGCCTTCC
CCGCATGTAGCAAGCTCAAATGGATAACAGTTTCGAGAAAAATGACATGCTGAAAGAATT
CTACATTCCGACCTATATTTTCATGCCGGAGTCCTTAGTGGAGCAAGTTTCTCACATACC
CAGCTGTCCAGTGATTGT

Homology of Contig U35_44201 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None