barSeed - Barley Seed Development Database

Probe CUST_832_PI390587928

Source Contig U35_46828

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_832_PI390587928	Hv_44K_v2	ACCTGGAAAATCTGGAAAGCCAGTTGTCCTCAATCAAAAGGCCAGCCTATCAGAATACTG	468	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59964.3	1258	2e-24	264 - 323	100	60 / 60	plus	ABC04618 ABC04620
MLOC	MLOC_59964.2	4159	2e-24	2412 - 2471	100	60 / 60	plus	ABC04618 ABC04620
MLOC	MLOC_59964.1	1380	2e-24	455 - 514	100	60 / 60	plus	ABC04618 ABC04620
JLOC1	JLOC1_39063.1	1975	8e-25	430 - 489	100	60 / 60	plus
Harvest21	ABC04620	684	3e-25	1 - 60	100	60 / 60	minus	ABC04620
Harvest21	ABC04618	1377	3e-25	249 - 308	100	60 / 60	plus	ABC04618
Harvest35	U35_46828	528	3e-25	469 - 528	100	60 / 60	plus
Harvest35	U35_439	1492	3e-25	364 - 423	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_46828 528 Hv_44K_v2
CAAAACAAGAGTTATATTCAGCGAGACTTCTATGGCGCGTAATGCGGCCAAGTTACGTCA
ACATTCCTCCTCATAGTACGGTGCTCCATTAGCTAACTCGGCGGCGGCGGCGGCGGCGGC
GGCTAGTGGCGGAGGACTTGTTTGGGCGTGTACCGGGCGGCAAGCAGCAGGTAGAGCAGC
AGGTTGCCGGCGCTGATGACGGCCCACAGCCAGAAGTAGTAGTCGAGGTGCCCCTCGTTG
AGGTTTGGCGCCAGCCACCCGGCTCGCCTCGCTGCCTCAAGCCACCAGCGGCGGGACGCC
GGAGGAGGGGAGCATGAAGGTCTCCGTCGTGTCCCGGAGCGGCCGCGAGGTCGTCAAGGG
CGGCGTCGAGCTCAAGGACTCGGCCAAGGTCGCGGATCTGCAGGAGGCCATCCACGCCAA
GACTAAGAAGTATTATCCTGCTAGGCAACGGCTCACCCTCCCTGCACAACCTGGAAAATC
TGGAAAGCCAGTTGTCCTCAATCAAAAGGCCAGCCTATCAGAATACTG

Homology of Contig U35_46828 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None