barSeed - Barley Seed Development Database

Probe CUST_8327_PI390587928

Source Contig U35_20252

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8327_PI390587928	Hv_44K_v2	ACCGGCAGAAGCTCTCGATATACGAACTTCTCGTTGGTGACATCGTGCACCTTTCCATTG	1030	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52579.1	4028	2e-24	1284 - 1343	100	60 / 60	plus	ABC09357 ABC14714 ABC14715
JLOC1	JLOC1_33706.2	4645	8e-25	1161 - 1220	100	60 / 60	plus
JLOC1	JLOC1_33706.1	4464	8e-25	1218 - 1277	100	60 / 60	plus
Harvest35	U35_20252	1110	3e-25	1031 - 1090	100	60 / 60	plus

Contig Sequence (1110 bp)

>U35_20252 1110 Hv_44K_v2
AATTCCCTTCCCTCCCTCTTCCCCGCCTCGCTCGGATCCCCTCCCCTACCTAAAGAACTC
GCCACCTTCCATGAAATCAGCCGCCCCCGAGGACAGAATACCGCCACTTCCATGAAAGTA
TCGCCCGTCGAGGTAGCCACAGAGTCGGACCCACGTACCCACGACGCGTCAACGACGGTC
CCCCACGCGCTTCCTTCCGGGAAAATGCCGGTCTGAGGAGCCGCGTGCTATATAGATACG
GCGGAGTTGGTGGAGAGGAGGGACGGCAGGAGAGCAGCAGGGACGCCCGCCATGGAGAGC
TACCTCAACGAGAACTTCGGGGGCGTCAAGCCCAAGCACTCGTCCGACGAGGCGCTGGGC
CGATGGCGCAAGGTCGTCGGCGTCGTCAAGAACCCCAAGCGCCGCTTCCGCTTCACCGCC
AACCTCGGCAAGCGATCCGAGGCCGCCGCCATGAAGCGGACCAACCAGGAGAAGCTGCGT
GTTGCTGTGCTTGTTTCAAAGGCTGCACTTCAGTTCATCCATGGTCTTGCTCCCCAGAGC
GAGTACACAGTCCCTGCCGCCATCAAGGCAGCAGGCTACGGTATCTGTGCCGAGGAACTG
AGCTCTGTTGTTGAGAGCCACGACCTCAAGAAGCTGAAAGTACATGGTGGCACCGAGGGC
CTCATATCAAAGGTGTCTACCTCAGAGTCGGATGGCCTCAGCACATCCAAGGACAAGCTT
GCGTCCCGGCAGGAGATCTTTGGCATCAACAAATTCGCCGAGGCGGAGGCCCGCAGCTTC
TGGGTCTTTGTCTGGGAGGCACTCCAGGACATGACACTCATGATCCTTGCTGCATGTGCC
TTCTTCTCGCTCGTCGTCGGCATTGCCACTGAGGGGTGGCCCAAGGGCGCGCATGATGGC
CTCGGCATCGTGGCTAGTATTCTTCTGGTTGTGTTTGTCACTGCGACAAGCGACTACCGG
CAATCCCTCCAGTTCAAGGACCTTGACAAGGAGAAGAAGAAGATCACGGTGCAGGTCACC
CGGAGTGGGTACCGGCAGAAGCTCTCGATATACGAACTTCTCGTTGGTGACATCGTGCAC
CTTTCCATTGNTGATCAAGTACCAGCTGAC

Homology of Contig U35_20252 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g10640.1	1020	7e-154	protein\|calcium-transporting ATPase, plasma membrane-type, putative, expressed
Brachypodium v1_2	Bradi1g70920.2	951	4e-174
Arabidopsis v10	AT4G37640.1	1014	2e-137	\| Symbols: ACA2 \| calcium ATPase 2 \| chr4:17683225-17686808 REVERSE LENGTH=1014