barSeed - Barley Seed Development Database

Probe CUST_8317_PI390587928

Source Contig U35_32233

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8317_PI390587928	Hv_44K_v2	TCAATGGATCGAATTCTAGTATTCAGGAGAGGGCTAAAGCCCTTGAGGTTGTGCAATATC	373	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.463	0.449	1.067	1.292	1.596	1.300
Raw	22.026	31.189	69.660	109.895	56.382	50.145

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58756.5	3913	2e-24	774 - 833	100	60 / 60	plus	ABC06768
MLOC	MLOC_58756.3	4047	2e-24	1019 - 1078	100	60 / 60	plus	ABC06768
MLOC	MLOC_58756.2	4449	2e-24	1421 - 1480	100	60 / 60	plus	ABC06768
MLOC	MLOC_58756.4	3652	2e-24	648 - 707	100	60 / 60	plus	ABC06768
MLOC	MLOC_58756.1	5322	2e-24	2284 - 2343	100	60 / 60	plus	ABC06768
JLOC1	JLOC1_38198.2	2275	8e-25	913 - 972	100	60 / 60	plus
JLOC1	JLOC1_38198.1	3869	8e-25	669 - 728	100	60 / 60	plus
Harvest35	U35_32233	476	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (476 bp)

>U35_32233 476 Hv_44K_v2
AAAAATGGTTCTTTTCAGCATGATATCCATTATTGGCTTGGTAAAGATACCAGTCAGGAT
GAATCTGGTACAGCTGCAATCAAGACTGTGGAATTGGATGTTGCTCTTGGCGGACGTGGT
GTTCAATACCGTGAAGTACAGGGAAATGAGACTGAGAAATTTCTTTCCTACTTTAAACCC
TGTATTATTCCAGAGGAAGGTGGAGTTGCATCTGGTTTCAGGCATGCTGAAATCAATGAG
AGGGAGCATGTAACACGATTATTTGTTTGCAGAGGAAAGCATACAGTCCATGTTAAAGAG
GTGCCTTTTGCAAGATCATCACTCAACCATGATGACATATTTATTTTAGACACGAAGTCC
AAGATATTCCAATTCAATGGATCGAATTCTAGTATTCAGGAGAGGGCTAAAGCCCTTGAG
GTTGTGCAATATCTCANAGACACTAACCATGAAGGAAAATGTGATGTAGCTGCAGT

Homology of Contig U35_32233 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g44890.1	1017	2e-98	protein\|villin protein, putative, expressed
Brachypodium v1_2	Bradi1g31417.1	969	3e-99
Arabidopsis v10	AT4G30160.2	983	1e-86	\| Symbols: VLN4 \| villin 4 \| chr4:14754528-14759511 FORWARD LENGTH=983