- Probe CUST_8316_PI390587928
- Source Contig U35_32235
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8316_PI390587928 | Hv_44K_v2 | CGAGGCTGGAGGCGTCGGTGAGGGCGTACGGCGGCGCCGGGCAGAGCAAGGTGACCAACA | 325 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.160 | 1.987 | 1.084 | 0.823 | 0.863 | 0.829 |
| Raw | 51.353 | 123.730 | 62.748 | 60.118 | 27.199 | 28.966 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363365 | 3646 | 2e-24 | 355 - 414 | 100 | 60 / 60 | plus | ABC06775 |
| MLOC | MLOC_19712.1 | 1324 | 2e-24 | 123 - 182 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_13660.2 | 441 | 8e-25 | 107 - 166 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13660.1 | 457 | 8e-25 | 123 - 182 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32235 | 441 | 3e-25 | 326 - 385 | 100 | 60 / 60 | plus |
Contig Sequence (441 bp)
>U35_32235 441 Hv_44K_v2 ATCACGCCTCTCCCTCTCCAATCCGTCTTGGACTCCTGGGTGGGATCGGCATCGGCACTG CTCGTGCTTCCCCCTCCGTCATCCTCCATCCCAGTGCCCCCTCCGTCATCCTCCATCCAC CCGGCGGCGGCGGGAAAGCTGGAGAAGAGCTACTTCGACGTGCTGGGCATCTGCTGCCCG TCGGAGGTGCCGCTGGTGGAGAAGCTCCTCGAGCCGCTCGCCGGCGTGCACAAGGTCACC GTCGTCGTCCCCTCCCGTACCGTCATCGTCCTCCACGACGCCGCCGCCATCTCCCAGGCC CAGATCGTGAGGGCGCTGAACGGGGCGAGGCTGGAGGCGTCGGTGAGGGCGTACGGCGGC GCCGGGCAGAGCAAGGTGACCAACANATGGCCGAGCCCCTACGTGCTCGTCTGCGGNGTC CTGCTCGTCGTCTCGCTCTTC
Homology of Contig U35_32235 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |