barSeed - Barley Seed Development Database

Probe CUST_8313_PI390587928

Source Contig U35_44211

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8313_PI390587928	Hv_44K_v2	CAACTACTGTTGCGTCAGGGTCTGCTTATGCAGAATTTGGGAAGACAAAGGTCATTGTGT	291	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52975.1	446	2e-24	270 - 329	100	60 / 60	minus	None
MLOC	AK369115	1256	7e-23	258 - 317	98	59 / 60	plus	ABC16912 ABC49970
MLOC	MLOC_74157.2	838	7e-23	759 - 818	98	59 / 60	minus	ABC16912 ABC49970
MLOC	MLOC_74157.3	1347	7e-23	1208 - 1267	98	59 / 60	minus	ABC16912 ABC49970
MLOC	MLOC_74157.1	1011	7e-23	896 - 955	98	59 / 60	minus	ABC16912 ABC49970
MLOC	MLOC_46227.1	423	7e-23	300 - 359	98	59 / 60	minus	ABC16912
MLOC	MLOC_46227.2	421	7e-23	298 - 357	98	59 / 60	minus	ABC16912
MLOC	MLOC_46227.3	523	7e-23	400 - 459	98	59 / 60	minus	ABC16912
JLOC1	JLOC1_49404.1	1086	4e-23	81 - 140	98	59 / 60	plus
JLOC1	JLOC1_29946.1	422	4e-23	66 - 125	98	59 / 60	plus
Harvest21	ABC41764	499	3e-25	292 - 351	100	60 / 60	plus
Harvest21	ABC41765	471	1e-23	291 - 350	98	59 / 60	plus
Harvest21	ABC16912	1591	1e-23	241 - 300	98	59 / 60	plus	ABC16912
Harvest35	U35_44211	499	3e-25	292 - 351	100	60 / 60	plus
Harvest35	U35_47119	630	1e-23	251 - 310	98	59 / 60	plus
Harvest35	U35_14841	1082	1e-23	902 - 961	98	59 / 60	plus

Contig Sequence (499 bp)

>U35_44211 499 Hv_44K_v2
TTTTGCAGTACCCATTGGATCAATCAACTAATGGCAGTCACTATGGTGATGGTGCTACTC
AATCAACTTTTGAAGCAAGTGGATCGCTTCCACCAATGCCTAGCACTTTTGATGACATGC
CTTCTGTTTCCAATAAGCCTGCAAACTCCAATTGCTTGAACCCAACCATGAAAGACCCAT
TCTCTTAGACAGCAACTTTTGAGGTGAAGTGGAGCAATAATGGTGTATTTTTGTTGCCTC
TCTGTAGCCTTCGCAACATTCTCAGAAGGAGAAGCGTTATGCAAACAGGGCCAACTACTG
TTGCGTCAGGGTCTGCTTATGCAGAATTTGGGAAGACAAAGGTCATTGTGTCAGTGTTTG
GCCCAAGGGAGAGCAAGAAAGCAATGTTGTACAGTGACACTGGTAGGCTCAATTGCAGTG
TGAGCTATATAACATTTGCCACTGGTATACGTGGACAGGGGTTGGAAAACAAAGAGTACT
CTGGAATGCTTCACAAAGC

Homology of Contig U35_44211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None