barSeed - Barley Seed Development Database

Probe CUST_8312_PI390587928

Source Contig U35_44212

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8312_PI390587928	Hv_44K_v2	CAGTTTAGACCAAATGTTATAAAAACCTGACATGTTATTGTGGCAACCATTGTGATAGAC	54	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.619	2.971	1.383	0.853	0.882	0.786
Raw	21.065	39.968	15.085	14.381	3.386	3.341

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5440.1	234	2e-24	140 - 199	100	60 / 60	plus	ABC41766
MLOC	MLOC_1591.1	293	2e-24	204 - 263	100	60 / 60	plus	ABC41766
MLOC	MLOC_74992.1	158	3e-21	1 - 60	97	58 / 60	minus	ABC41766
JLOC1	JLOC1_52224.2	1962	6e-21	1445 - 1503	97	57 / 59	plus
JLOC1	JLOC1_52224.1	1954	6e-21	1437 - 1495	97	57 / 59	plus
Harvest21	ABC41766	571	3e-25	55 - 114	100	60 / 60	minus	ABC41766
Harvest35	U35_44212	571	3e-25	55 - 114	100	60 / 60	minus

Contig Sequence (571 bp)

>U35_44212 571 Hv_44K_v2
TTTTTTTTTTTTTTTTAATCATAAGTTCAATGTTTTTATTATCCAAATTGATTTGTCTAT
CACAATGGTTGCCACAATAACATGTCAGGTTTTTATAACATTTGGTCTAAACTGAAATTT
ATAACAATTTAAAAGGAATTTCTGTTTAGCAAACGCCCTTCTCTGTAGCTAGATGTTTTC
ACGTCGGCATCTCATTGCCTCGGAAGTGTCCCTCCCACCATGGTTCGTTTCCTATGTGGC
ACTCCTCTTTATACCCCTTGCATCGCCTTTGATTTTTGGACATGTTGGTATCTTTCTTCA
GTGCCACGCGGAACTCTACCTCCCGCATCGCACCAACAACAAATTGGGTGTCACCAAGAG
ATTTGCTCCACCTCAATAAAGCACATGGAGAGGCAAACTTGAATCTCCGATTTGAACACC
ACCTTGCCAACGGAGCTAGGTTTGGTCCTGTGCAAGAAGGCCATACCAAATGTGGCAGCG
CCGGCCGGGCTGGAAGGAGACAGCTTGGGCGGCGGCGGAGGCGGACGCCATGGTGGCGAC
AGCGGGAATGCTTCTTGTGTTTTGGCGCCGC

Homology of Contig U35_44212 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None