- Probe CUST_830_PI390587928
- Source Contig U35_46829
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_830_PI390587928 | Hv_44K_v2 | CATGCTGGATCTAGGGAGGTGTAGGACTTTGTTGTAATGCCCTTTTTTCTGGGAATTTTG | 186 | GeneList: blue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.785 | 1.570 | 1.184 | 0.840 | 0.258 | 0.267 |
Raw | 1292.607 | 1786.985 | 1174.810 | 1342.686 | 143.119 | 156.588 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK353936 | 1301 | 2e-24 | 1165 - 1224 | 100 | 60 / 60 | plus | ABC47423 |
MLOC | MLOC_30904.1 | 763 | 2e-24 | 535 - 594 | 100 | 60 / 60 | plus | ABC47423 |
JLOC1 | JLOC1_20385.1 | 750 | 8e-25 | 520 - 579 | 100 | 60 / 60 | plus | |
Harvest21 | ABC47423 | 531 | 3e-25 | 187 - 246 | 100 | 60 / 60 | minus | ABC47423 |
Harvest35 | U35_46829 | 531 | 3e-25 | 187 - 246 | 100 | 60 / 60 | minus |
Contig Sequence (531 bp)
>U35_46829 531 Hv_44K_v2 TTTTTTTTTTTTTTTTTCCACTTCTTGATTTGGGTTGTGCCTCTTCATATCAAATAATAT TTACATCATAGATATACATTCAATCCAGATTCAATGCCAATATATTTTCCAATCCAAAAA TAAATTTAAAGTAAACATGGTGGCAAGCAAATATACACCAAATTCTTAGCAAAATCACCA GTACAACAAAATTCCCAGAAAAAAGGGCATTACAACAAAGTCCTACACCTCCCTAGATCC AGCATGCATTTATTTTTCCAACTTCTTCATCCTCGATCTCAGGAGAAACATGAATAAAGT CCCTGCAAATTAAAAGGGAATCTCCATCAACGGGTCATAAGTCGTAATCATACGGTAGAT ATTCAACAAGTAAGAATGACAAATATAGATAAAATGGAATGCAGGAGCATGTGCTTCCTT AGTAGATAGTAAAAAAATAATTTGAGTGTCCTAAAATTCAGGTAAAATTACATGTGAAAT GTTTGACCCATGCAGATTCGGGAAGTTTTTCTTGGAAAAGAAAACATTATT
Homology of Contig U35_46829 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |