barSeed - Barley Seed Development Database

Probe CUST_8305_PI390587928

Source Contig U35_20262

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8305_PI390587928	Hv_44K_v2	CTGTCTTGTATATCATGTATGCAGATGTTACTTGGCATCTCAATCTCTATGAATGCATAT	973	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37790.2	1198	2e-24	961 - 1020	100	60 / 60	plus	ABC13616
MLOC	MLOC_37790.1	1572	2e-24	1335 - 1394	100	60 / 60	plus	ABC13616
JLOC1	JLOC1_24510.1	1172	8e-25	974 - 1033	100	60 / 60	plus
Harvest21	ABC13616	1063	3e-25	974 - 1033	100	60 / 60	plus	ABC13616
Harvest35	U35_20262	1064	3e-25	974 - 1033	100	60 / 60	plus

Contig Sequence (1064 bp)

>U35_20262 1064 Hv_44K_v2
AGCAAAGTTGATGAAACGCGAAGGTTAAAGATGGCACTTGATGTGGCAAAAGGAATGAAT
TACTTGCACACTAGCCATCCTACTATTGTACATCGTGATTTGAAATCACCAAATCTTTTA
GTGGATAAAAATTGGGTCGTTAAGGTGTCAGATTTTGGGATGTCAAGGTTGAAGCATAAC
ACTTTTCTTTCCTCCAAGTCGACAGCTGGAACACCGGAGTGGATGGCACCAGAGGTCCTG
CGTAATGAGCCAGCTAATGAGATGTGTGATGTCTACAGTTTTGGAGTAATCCTATGGGAA
TTAGCAACGCTGTGTGTACCTTGGAGCGGGCTGAATCCAATGCAAGTCGTTGGAGCAGTT
GGGTTCCAGAACAAACGACTAGACATTCCCAAAGAGGTTGATCCACTGGTGGCTAGCATA
ATATCTTCATGCTGGGACAACGATCCAAGCAAACGACCATCGTTCTCCCAGCTCTTGTCA
CCTCTAAAGAAATTACAGCGGTTACTTGTTACAGAAAGCCTCTGACAATTTGTGAGACAA
ATATCTGGATAAACGGAAAAAAGAAGAAAAATATAAGTATTTATGCTACTAAGTGGACCA
AGTTTTTCATGTTGAAGCCCGTGGAGATGTATTCAAGATCTCTGGAGTATGGATGCGTAT
GGACAAAGGTTCTGCACATCCTTTTGTGAAAATTGTGAGAACTATCTGCAGCAGCACGAA
GGTGGTGCTGACGAAAGCGTAGTGTGTTAGTTCCAAGTGAAGAAAATGTGGTGCAACACG
AAGTGCTCTGTGCCATGGTAAATAATTGTTCAGTTCTGTATTTGGAGCGGGGTGGGGGTG
ATTCTGAGAATCAGAATTCACCACAAAGATAGGGTCTTAATTTTTGTTGGTTTAAAACAG
AAAATGGAAAGAAAAAAAGGAAGCCAAAAGTTTTTTATGTCTGCAAAAAGTGCAGGCTTA
TATTTATCACATGCTGTCTTGTATATCATGTATGCAGATGTTACTTGGCATCTCAATCTC
TATGAATGCATATTAATACTTTCAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20262 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g12810.1	865	7e-94	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi3g08260.1	854	9e-97
Arabidopsis v10	AT5G11850.1	880	2e-81	Protein kinase superfamily protein \| chr5:3816632-3821024 REVERSE LENGTH=880