barSeed - Barley Seed Development Database

Probe CUST_8302_PI390587928

Source Contig U35_20265

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8302_PI390587928	Hv_44K_v2	GCAGTGACTAGGGGTTTCCGGTGCATGGTGTATCCGTATACACAAGTTTTGAACAAAAAA	907	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.234	1.507	1.418	0.930	0.350	0.374
Raw	408.941	772.691	639.431	647.957	88.941	102.062

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13106	756	3e-25	686 - 745	100	60 / 60	plus	ABC13106
Harvest35	U35_20265	978	3e-25	908 - 967	100	60 / 60	plus

Contig Sequence (978 bp)

>U35_20265 978 Hv_44K_v2
TAACACCGCAGTTCATCAGCCACCAAGACAGCCAGGGCTATACCCAAACCATTATCCCCC
ATCGGCATATACTCCGGGGCACCAAACAACAGGATTATACCCGAGTCAGAGCCATCCACA
GGCACACCCTACATGGGACCCGACAGGGTTACTATACCAGAATCATAATCATCACCAGGC
GTATACCCCAGAGTACCAAGCAGCAAGACCGTACCAGTATCAGAGTCAACCGCAGCCTCA
TACAAGCGGGTTCCAAACACCAAGATACCAGTATCAGAGTCAGTCACCTGTTCATACAGG
CGGGATCCAAAGGCCAGAACCATACAACTATCGGAGTCAACCGCAGGGCCATTCAACTGG
GTTCTACATGCCAAGACAATACCAGAATGGATATCACAATCAGCCGGCCTATACTGCAGG
CCAAGGACCATACCAGAACTGGCAGGGGACGCAATACACACCCGACCATCAGACTAATAG
GTATAATAGGAATGGTGCGACTACAAGGTACGAGCCTGTTGCTGGAGGGGTCCAGAATGG
ACCGGCACGGGCACGAGACTCGCGATCGCAAGCTTCCTCAAGCCGGCAAGCCTCCTCAAG
CCGTACGGAATGGCGAGGAAATAGTCAACATCAGACCTGACTGGAACTGTTAGTCGCAGC
AAAGATAGCAATTTGCTGTTTCCATTGGCTGACAAGATGTATCGGTTTTGATTTCATGAT
GTATGTCACCCTTCATACTTCGGTTTGTCGTGGAGGCAACATAACGATTTCCACTAGTAA
GATTTTGTGCAGATCCCCAAATAGAATGTTTCGCTGGTGAAATGTCACTTGAGATGCCAA
ATTCCTAGAGCGTTGTTGCCTTCATCCACTGAACTTTCGTGCACATGGTTGCATCTTCTC
TTTTAGAGCAGTGACTAGGGGTTTCCGGTGCATGGTGTATCCGTATACACAAGTTTTGAA
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_20265 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None