barSeed - Barley Seed Development Database

Probe CUST_829_PI390587928

Source Contig U35_22871

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_829_PI390587928	Hv_44K_v2	GTTTATCGTCCTAATGCGTTGACAACTATGGTACTAGTATTTCTGCATCATATTTAAGAG	1300	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.148	0.366	1.201	1.507	1.012	1.196
Raw	12.821	48.878	146.730	292.354	66.964	86.509

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65197.1	2752	2e-24	13 - 72	100	60 / 60	minus	ABC16870
JLOC1	JLOC1_42890.1	2663	8e-25	2589 - 2648	100	60 / 60	plus
Harvest21	ABC16870	1400	3e-25	1301 - 1360	100	60 / 60	plus	ABC16870
Harvest35	U35_22871	1400	3e-25	1301 - 1360	100	60 / 60	plus

Contig Sequence (1400 bp)

>U35_22871 1400 Hv_44K_v2
GGCATGCAGCCAGCTCGCCCAGGCAGCGCTGGCAGGTGCAGCGACGGCGGCGACAGCGAC
GGGGCACGCAGCAAGTTGGTATTCTTCGGGGTCGACGGCGAAAGCGGCGGCAACGACGAA
GCTGACGATGACGGGGGAAGCGATAGCAGCGCCGGACGGAGGGCAAGTGGTGGCTGGACA
GCGCAACAGCAGAGGAGGAGGAGCAAGTTCGAGCTCGAGGAGCTGCTTCGCGCGTCAGCG
GAGATGGTCGGTCGTGGTAGCCTCGGGACAGTGTACCGCGCGGCGCTGGGCGACGACCGC
ATGGTGGCCGTGAAGCGGTTGCGCGACGCCAACCCCTGCGCCCGCGACGAGTTCCACCGG
TACATGGACCTCATCGGCCGCCTCCGTCATCCGAATCTCGTCCCCCTCAGGGCCTTCTAC
TACGCCAAGCAGGAGAAGCTCCTCATCTACGACTACCTCCCCAACGGCAACCTCCATGAT
CGCCTCCACGGGCACCAGATGACAGGGGAGACGCCGTTGGACTGGACGACGAGGGTGACG
CTGCTGCTCGGCGCGGCGCGCGGGCTGGCCTGCATCCACAGGGAGTACCGCGAGTCCACC
ATACCCCACGGCAACATCAAGTCCACCAATGTCCTGGTCGACAAGAACGGCGCCGCCTGC
GTCACAGACTTCGGCCTCGCGCTTCTGCTCAGCCCGGCGCACGCCATTGCCCGCCTCGGC
GGGTACATCGCGCCGGAGCAGTCGGGCGACCACAAGCGCCTCTCACAGGAGGCAGACGTG
TACAGCTTCGGCGTGCTCGTCCTAGAGGCGCTGACCGGCAAGGTGCCGGCACAGCACCTG
CAGCCGCTGCCGGACGCAGCCGGCAACAGCGCACAGAGGAAAGATAAGCAGGCGGCTGTG
AGCCTCCCGGAGTGGGTGCGGTCGGTGGTGCGGGAGGAGTGGACGGCAGAGGTGTTCGAT
GCGGAGCTGCTCCGGTACAAGAACATCGAGGAGGAGATGGTGGCGTTGCTGCACATCGCG
CTGGCGTGCGTGGCGCAGCTGCCCGAGCAGAGGCCTTCCATGGCCGACGTGGTGAGGATG
ATCGAGAGCGTCCCCGTGGACCAGTCGCCGCTCCCGGAGGAGGATGTATCGATGTCGCCG
TCCATTGGCATCACCACGGACGATGGTCTCAGCTACTAGTTTTAGTTCACCATCAGCTCT
CCACTTTCATAGCTAGTACGTACTAGCATTCTTCACTGTGCTTGGTGATGTTCTGGGTTG
AAATGCATTTTCCTGGTTCCGTTCATGGAAATGTTGAAATGTTTATCGTCCTAATGCGTT
GACAACTATGGTACTAGTATTTCTGCATCATATTTAAGAGATAAATTCTTTCGTGGTCAC
TATAAAAAAAAAAAAAAAAA

Homology of Contig U35_22871 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g05120.2	773	0.0	protein\|receptor kinase, putative, expressed
Brachypodium v1_2	Bradi4g42800.1	741	6e-157
Arabidopsis v10	AT2G36570.1	672	7e-140	Leucine-rich repeat protein kinase family protein \| chr2:15335583-15337725 FORWARD LENGTH=672