barSeed - Barley Seed Development Database

Probe CUST_8294_PI390587928

Source Contig U35_22391

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8294_PI390587928	Hv_44K_v2	CCTCCTTCACGGTAGCCGGTAGCGGTGGCAGGCCAATATACATAACTTAAAAACAAAAAA	679	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.498	2.177	1.261	0.719	0.301	0.377
Raw	289.882	651.865	336.497	296.383	43.544	60.493

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12506.1	1243	4e-23	1063 - 1119	100	57 / 57	plus
Harvest21	ABC34687	536	3e-25	466 - 525	100	60 / 60	plus	ABC34687
Harvest35	U35_22391	750	3e-25	680 - 739	100	60 / 60	plus

Contig Sequence (750 bp)

>U35_22391 750 Hv_44K_v2
CACGCGTCCGACTCATTAAATCCTTTGCATGTTGGTGCCTAGATGGATCAAATGGACTAT
GGTATATGCTCTTTAGCAAGGAGAAATATGAGGACTTCACTTTATATGCCAAGCACACCT
CAGCAAACTGAACCATGCAAAAGAAGAAACTCTGGCTCGATGATTGAAACGAGGGCTCAA
AAAAGGCACAACACGAATGGCAATGCTGACCACCTTGGAAGTGTCAATGTTGTTGAGTTT
GGAGATGAAAGAAGCAGAGTCTTAATTTGTCAGAAGATGGTGCTAAAGGCCGAGTGTTCC
GAGCTCGAGGCGGCAGCGCAGAATCTCCAAAGCAAGGCGGACAGGCTGAGGGGTGAACTC
CGCGAGTGGCAACGGAGGCAGAGGAGCCTGACGGACGAGCTGGAGTTCTACGACGGCCTC
AGCGCGATACGGAGCAGGATCCCCAGGGCCAGCACCTCCTCCATGGGAGTGGGATGGATC
TGATCTGAACGGCATGACTGACAGACACCACACCTGTAGCGGAAGTCCATATAACTACGT
ATAGGTACTAATAGTAGTAGTACTAACTTATGCGGCGGTTTGACGTCCCGGGATGGTAGA
ACCGCAGCAAGTAGATCTATGGTTTGGCACTGGGTGTGCATGGTGGTAACATCGGACGTT
TGATGTAGTAGGAACAAGACCTCCTTCACGGTAGCCGGTAGCGGTGGCAGGCCAATATAC
ATAACTTAAAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_22391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None