barSeed - Barley Seed Development Database

Probe CUST_8289_PI390587928

Source Contig U35_22396

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8289_PI390587928	Hv_44K_v2	TAATAGTTGATTAGTCAGTCTGGCAACTCAATGCCTGATGCCAGGTATCGATCAGTCACC	559	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.219	0.492	0.823	1.655	1.311	2.036
Raw	12.362	45.790	64.535	210.974	55.680	95.510

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4171.1	4043	2e-24	254 - 313	100	60 / 60	minus	None
MLOC	MLOC_4172.2	928	2e-24	158 - 217	100	60 / 60	minus	None
MLOC	MLOC_4171.2	909	2e-24	169 - 228	100	60 / 60	minus	None
MLOC	MLOC_4172.1	964	2e-24	254 - 313	100	60 / 60	minus	None
JLOC1	JLOC1_2552.4	5349	8e-25	3737 - 3796	100	60 / 60	plus
JLOC1	JLOC1_2552.3	2270	8e-25	658 - 717	100	60 / 60	plus
Harvest21	ABC18495	665	3e-25	560 - 619	100	60 / 60	plus
Harvest35	U35_22396	665	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_22396 665 Hv_44K_v2
TCAGTCAGGACTCAGCAGGCGATCGATCGAGGGCCGCGTTCGGTTCGGTTCGATCCGATT
CGAGATCAAAATCAAAAATCAATCCCAAAACACCCAGCAAGAGCGAGCGACCGACGGAGG
GCGGGCGTCGAGGCTGGCCGCCGCCGCGAGGATACCGGCGCCCGTGCGCGCGATGATGGC
CTGGTGGCGGAAGAAGGTCGTCTTCCCCGCGCGCCGCGCGCTCGCCGCCGTCTCCGCCCG
CGTCCGCTCCCGCAAGACAGGCGGTGGAGGCAGCCTGCTGAAGCTTCATGAGGACGTGCA
GACCTGTGGATACAAGGACGTGCAGGTGATGTTCGAGATGCTGACGTCGGAGCTGGAGGA
CCCCAAGAGGCGCAAGCAACAGACGGCGGCCTCCTGGAGGCCGCCCTCGGCGTGGCCCAG
CCGGTCGTCGTCCTCGATCGCGGCCGCGCAATAGAGACCCCCGACGCTGACATGGAATGC
AGCTCGGTTTGGTGGCACCGGTCCATAATAACAAGATGAGGAGGAGGGCCGATTTAGTAA
GTAAGTAAGTACCCTGTGGTAATAGTTGATTAGTCAGTCTGGCAACTCAATGCCTGATGC
CAGGTATCGATCAGTCACCCCCCATCCCCCTGCCCGTCGACTCTCCGGGAAAAAGATCGA
GGATT

Homology of Contig U35_22396 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None