barSeed - Barley Seed Development Database

Probe CUST_8288_PI390587928

Source Contig U35_22397

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8288_PI390587928	Hv_44K_v2	AAGAATATTTTCCCGTGCAGTCTCGTGCTGGCTGCTGGTGTCTGCCAGAAATGGCCGACG	7	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.951	1.108	1.045	0.600	0.732	1.046
Raw	18.807	15.652	13.582	11.322	3.245	7.684

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14197.2	690	2e-24	456 - 515	100	60 / 60	minus	None
MLOC	MLOC_14197.1	1404	2e-24	1248 - 1307	100	60 / 60	minus	ABC41203
JLOC1	JLOC1_9684.1	1644	8e-25	218 - 277	100	60 / 60	plus
Harvest21	ABC17884	576	3e-25	8 - 67	100	60 / 60	plus
Harvest35	U35_22397	577	3e-25	8 - 67	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_22397 577 Hv_44K_v2
GTGACGCAAGAATATTTTCCCGTGCAGTCTCGTGCTGGCTGCTGGTGTCTGCCAGAAATG
GCCGACGGCGTCCTTCTGACAACCGCGCCGGCAGCGCTAACAGTGGCGTTCTTGCTGTTC
TTCGGCGCCGCGCACGGTCAGCTCCAGATGGGGTTCTACTCCGACTCCTGCCCCGGCGCC
GAGGACATGGTCACCACCGCCGTCCAGGAAGCCGCCGCCTCGGACGCCACCATCCTCCCC
GCCCTCGTCCGCCTCCAGTTCCACGACTGCTTCGTCAGAGGATGCGACGCGTCGGTGCTG
ATCACGGGCAACGGCGCCGAGGTGAACAACAACAAGCACCAGGGCCTCCGCGGCCTGGAC
GTGGTCGACGCCGCCAAGGCGGAGCTCGAGGAGCAGTGCCCCGGGGTCGTCTCCTGCGCC
GACATCGTCGCTCTCGCCGCACGCGACGCCATAGCCATGACAAACGGGCCGTCGTTCGAG
GTGCCGACGGGGCGGCGCGACGGGCTGTCGTCCAACGTCCGCGACGCCGACGTGCTGCCG
GACGTGAGCGACTCCATCCAGGTGCTCCGCTCCAAGT

Homology of Contig U35_22397 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08920.1	328	1e-82	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g40680.1	313	2e-81
Arabidopsis v10	AT1G77100.1	336	7e-52	Peroxidase superfamily protein \| chr1:28965772-28967066 REVERSE LENGTH=336