barSeed - Barley Seed Development Database

Probe CUST_8286_PI390587928

Source Contig U35_22399

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8286_PI390587928	Hv_44K_v2	AACACCTAGTAAAGGGTGTTTAGTTTCTGACCCACGTCTTGACATAAGCTCTCTCGTGGT	717	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.455	1.778	1.133	0.822	0.358	0.448
Raw	1742.833	3444.718	1854.643	2208.458	322.339	443.487

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38511.2	1325	2e-24	1164 - 1223	100	60 / 60	plus	None
MLOC	AK362472	1628	7e-23	1482 - 1541	98	59 / 60	plus	None
JLOC1	JLOC1_25049.1	1499	8e-25	1192 - 1251	100	60 / 60	plus
Harvest21	ABC16749	881	3e-25	718 - 777	100	60 / 60	plus
Harvest35	U35_22399	881	3e-25	718 - 777	100	60 / 60	plus

Contig Sequence (881 bp)

>U35_22399 881 Hv_44K_v2
GAGTATGTGATATGCATTCTGCACAAGCATTGGGATACTTCGATATTCCTGTAGACCATA
TATATGGACAGCCTGTGATTCTGGATTACCTTGCTAGCAAGACAATTTCTAAGGATCTTG
TGGTTGTTTCTCCTGATGTGGGTGGTGTTGTTAGAGCACGTGCATTTGCCAAGAAATTGT
CTGACGCCCCTTTAGCTATTGTTGACAAAAGAAGACAGGGTCACAATCTGTCAGAGGTCA
TGCACTTAATTGGTGATGTGAAGGGGAAAGTTGCTATCATGGTTGATGACATGATTGACA
CAGCAGGGACAATTACTAGCGGAGCAGCATTGTTAAAACAGGAGGGAGCAGAGGCTGTTT
ATGCTTGTTGCACACATGCTGTCCTTAGCCCACCTGCCATTGAAAGGCTTTCTGGAGGCA
TCTTTGAGGAAGTTATAGTAACTAACTCCATCCTGTTGCCAGAGGACAAATGCTTTCCTC
AGCTGACGGTGCTCTCCATGGCCAACCTTGTAGCAGAAACTATCTGGCACGTTCACCGTG
ACGGCTCAGTGAGCAGCATCTTTCAATAACGGCGAGCATCTTCTTACATTTGGGTGGTAT
AGAGGAGGCACCAGATGCTTGTGCCATTGGTGTAGGAATCAATTTTTGGTGAAATGACAA
ATAAAGTTGCATTGCCGTCTAGGCATCGTACTTGTACTGGATGATTAATTTTGGGTCAAC
ACCTAGTAAAGGGTGTTTAGTTTCTGACCCACGTCTTGACATAAGCTCTCTCGTGGTCCG
CTCATGTCACTCGTAGCGCTGCGAAGGATTATTATTGTTGGAATGTCTAGTCATTGTCGA
AGGAATGACATATTGCTTATCATCAAGGATCTATGCTTCAT

Homology of Contig U35_22399 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41360.2	400	5e-111	protein\|phosphoribosyl transferase, putative, expressed
Brachypodium v1_2	Bradi1g35940.1	397	4e-117
Arabidopsis v10	AT2G35390.2	403	7e-89	Phosphoribosyltransferase family protein \| chr2:14895528-14897581 REVERSE LENGTH=403