barSeed - Barley Seed Development Database

Probe CUST_8279_PI390587928

Source Contig U35_46353

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8279_PI390587928	Hv_44K_v2	TTCTATCCCAGCTATCTCACTCACTGGTGCTCGTCCGGTTCGATCGACAGAGATGGGCAG	55	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13887.2	1215	2e-24	76 - 135	100	60 / 60	plus	None
MLOC	MLOC_13887.1	539	2e-24	110 - 169	100	60 / 60	plus	ABC09250 ABC53019
MLOC	MLOC_13887.3	818	2e-24	65 - 124	100	60 / 60	plus	None
JLOC1	JLOC1_9443.1	1228	8e-25	175 - 234	100	60 / 60	plus
Harvest21	ABC46361	423	3e-25	56 - 115	100	60 / 60	plus
Harvest35	U35_46353	423	3e-25	56 - 115	100	60 / 60	plus

Contig Sequence (423 bp)

>U35_46353 423 Hv_44K_v2
CCCCTCTCCTCTCCTGGGACTGACCGATTCCCCCTCGAGACTCGAGCCAGCCGCCTTCTA
TCCCAGCTATCTCACTCACTGGTGCTCGTCCGGTTCGATCGACAGAGATGGGCAGGCAGC
CGTGCTGCGAGAAGGTGGGCCTGAAGAAGGGCCCGTGGACGGCGGAGGAGGACCANAAGC
TCGTCGCCTTCCTCCTCTCCCACGGCCATTGCTGCTGGAGGCTCGTCCCCAAGCTCGCAG
GGCTGCTGAGGTGCGGGAAGAGCTGCCGCCTGAGGTGGACCAACTACCTGCGGCCCGACC
TCAAGCGGGGCCTCCTCTCCGACGACGAGGAGAGGCTCGTCATCGACCTCCACTCGCAGC
TCGGCAACAGGTGCGTCTGTCCTGCTCGATCGACGACGGGGGGTACGCATGTTCGCGTCG
TGA

Homology of Contig U35_46353 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g14670.1	268	3e-58	protein\|ODORANT1, putative, expressed
Brachypodium v1_2	Bradi3g56917.1	262	1e-59
Arabidopsis v10	AT1G66230.1	282	2e-52	\| Symbols: MYB20, AtMYB20 \| myb domain protein 20 \| chr1:24677322-24678246 FORWARD LENGTH=282