- Probe CUST_8267_PI390587928
- Source Contig U35_46369
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_8267_PI390587928 | Hv_44K_v2 | CTGGGAGCAAATTGCTACCTAGTAAAATATATAAGATTTTCCTATCCCCCAAAAAGGAAA | 7 | GeneList: brown MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.656 | 1.752 | 1.143 | 0.789 | 0.432 | 0.399 |
Raw | 184.245 | 296.815 | 171.316 | 187.518 | 34.939 | 35.734 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC46412 | 271 | 3e-25 | 8 - 67 | 100 | 60 / 60 | minus | |
Harvest35 | U35_46369 | 271 | 3e-25 | 8 - 67 | 100 | 60 / 60 | minus |
Contig Sequence (271 bp)
>U35_46369 271 Hv_44K_v2 TTTTTTTTTTCCTTTTTGGGGGATAGGAAAATCTTATATATTTTACTAGGTAGCAATTTG CTCCCAGGAGTTCCATAAGACATAGTACAAGTATACAACAGCGAGGAAGTGGCATGCTGG AACCAAAGTGGCAGTTTTTCTTATACTATATCACTCCTGGCGTCAGAAACTAAGTAAGAA GATGCAAAATTGAACACAAAATTTCTGATAACCGGGGGGGGGTGGTCAAAGCACAAATCT TGTTCTAACATCCAGGCGGCCTACAATTATT
Homology of Contig U35_46369 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |