- Probe CUST_8266_PI390587928
- Source Contig U35_34394
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8266_PI390587928 | Hv_44K_v2 | AGTAGATTCGTCTTCTGAAGTTCTAATGTACTCAGGGTTCCATTGGTCATGAAACGGACG | 3 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.754 | 1.934 | 1.088 | 0.827 | 0.394 | 0.501 |
| Raw | 615.952 | 1055.652 | 527.029 | 642.052 | 104.078 | 147.692 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_74333.1 | 1662 | 2e-24 | 34 - 93 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_74333.2 | 1662 | 2e-24 | 34 - 93 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_74333.3 | 1706 | 2e-24 | 8 - 67 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_49534.1 | 1710 | 8e-25 | 1574 - 1633 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_34394 | 353 | 3e-25 | 4 - 63 | 100 | 60 / 60 | minus |
Contig Sequence (353 bp)
>U35_34394 353 Hv_44K_v2 TGCCGTCCGTTTCATGACCAATGGAACCCTGAGTACATTAGAACTTCAGAAGACGAATCT ACTTCGAGTTAACAGCAGAACATAAAAACTCGATGGATGAGTTCTCAGCGGGAATGCTAG AAATTCGAACGGCCTTTCTAACAACAGTTCGCTCATGTGCTGAGTTTTGCACTTATGTTA CTGCTTTTGCCGTCTGTTCCTTTTCTTCGTGGGCATTTGGGTTTGCTCCGATAGTTTTTT CTCCTTGAAAGCCTTCACCATATTGTAAACCTTCCGAATTCCTGATGTCAGGCCCATGGA ATCAATTGAACTCTCATCGACGAGTTTCAGTTTCGTGCTATCTCGTCCCTTGT
Homology of Contig U35_34394 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |