barSeed - Barley Seed Development Database

Probe CUST_8265_PI390587928

Source Contig U35_34397

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8265_PI390587928	Hv_44K_v2	TGAAAGCATATCATGGACTGCTTGTACCAGCTCCGTGGAAGATACTTTGCCGTATTCAAG	91	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14650.2	13289	6e-24	12665 - 12723	100	59 / 59	minus	ABC18043
MLOC	MLOC_14650.3	13266	6e-24	12642 - 12700	100	59 / 59	minus	ABC18043
MLOC	MLOC_14650.1	13813	6e-24	13113 - 13171	100	59 / 59	minus	ABC18043
JLOC1	JLOC1_10003.3	13280	3e-24	12599 - 12657	100	59 / 59	minus
JLOC1	JLOC1_10003.2	13405	3e-24	12724 - 12782	100	59 / 59	minus
JLOC1	JLOC1_10003.1	13541	3e-24	12860 - 12918	100	59 / 59	minus
Harvest21	ABC18043	809	1e-24	547 - 605	100	59 / 59	plus	ABC18043
Harvest35	U35_34397	736	3e-25	92 - 151	100	60 / 60	minus
Harvest35	U35_22051	865	3e-25	205 - 264	100	60 / 60	minus

Contig Sequence (736 bp)

>U35_34397 736 Hv_44K_v2
CCCTCCAGATGATGCTCGAGCGGCCGCTGGACAACCAGGCCACTCGTCCGTTAGCGCTAG
AACTGAAGGCGCAGATGATATGGCTGCTGGGCTTGAATACGGCAAAGTATCTTCCACGGA
GCTGGTACAAGCAGTCCATGATATGCTTTCAGCAGCAGGGGTAAGGATGGATGCTGAGAA
GGAAACACTGCTACAGACTACCCTTTCCTTGCAAGACCAGCTTAAAGAATCTCAAGTGGC
TCTCTTGGTGGAGCAGGAGAAAGCCGAGTCAGCGGTGAAAGAAGCCGACATAGCCAAGGC
GGCATGGTCATGCCGCGTCTGCCTGAACTCCGAGGTGAACATGGGCATCGCGACACCGAG
CTCGAGCACCTGTTGCACAGGACGTGGCAGCGGCCGCTCCGTCCCTCGACATAGAGGTGG
ACGGGTACTTCTTCCTCAGCGTGCGCACCTTATCCATCATCTCCGGCATGAACTTCTGGC
CACCGAAGCCAGGCTCAACCGTCATCACCAGAACAAGTTCTACAGGGGTTTCTGCTTCGA
CCAGAGGGAAAACATCCTCCACAGGAGTACCAGGCTTCAATGATACACCAGGCCGCATGC
CCTTTGCTTTAATGCTTTGGATGAGCTCTTTCCAGTTATCTCTGGTGACTTCTATATGGA
ATGTGAATCCTGAGGCACCAGCTTTCCCAAATGCCTCTACANTATCAGAAGGATTTGTGA
CCATGAGATGGCAATC

Homology of Contig U35_34397 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32810.2	215	3e-62	protein\|ribulose-phosphate 3-epimerase, putative, expressed
Brachypodium v1_2	Bradi4g34610.3	192	1e-66
Arabidopsis v10	AT3G01850.1	225	3e-54	Aldolase-type TIM barrel family protein \| chr3:300428-301987 REVERSE LENGTH=225