barSeed - Barley Seed Development Database

Probe CUST_825_PI390587928

Source Contig U35_22875

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_825_PI390587928	Hv_44K_v2	CAAGTGATGATGACACATCAACTCAATTTTCATTCAAGAATGTATTGTGCCATGCTAACT	1114	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81757.2	2926	2e-24	2854 - 2913	100	60 / 60	plus	ABC21050
MLOC	MLOC_81757.1	5414	2e-24	2552 - 2611	100	60 / 60	plus	ABC07478 ABC21050
JLOC1	JLOC1_54386.1	1836	8e-25	1199 - 1258	100	60 / 60	minus
JLOC1	JLOC1_54385.2	3177	8e-25	2210 - 2269	100	60 / 60	plus
JLOC1	JLOC1_54385.1	3516	8e-25	2549 - 2608	100	60 / 60	plus
Harvest21	ABC21050	1183	3e-25	10 - 69	100	60 / 60	minus	ABC21050
Harvest35	U35_22875	1183	3e-25	1115 - 1174	100	60 / 60	plus

Contig Sequence (1183 bp)

>U35_22875 1183 Hv_44K_v2
GGTTTGTCAAAATTATGCAAATCGGCTGATTCTTGTGAATCTCTGTTCACTGGTAACAGC
ATAGAATTTCGCAAGGCTTATGATTACTCATTGGTTCAGAAAGATGGGCACTCAGTTCCA
CATACTTCAGATATTGATGAGAAGGATCCGACTAGAAGTAGCCATAAAAGAAGGAAGAGA
GATAAAAAGAGAAGACGACATAGATATGATTCTGACGAGGATAATGTTGATGAGCTGCTT
GAACTTGGAACCTTCACTGGGAAGAGGGCTATTGAATCACAATGTGGAAGCTGGTACCTG
TCAACTGATGATTTCTCTGCTCCTTGGGACATTGCCGACATACCGGATCACATTTCTACT
CGTTATCTTAGAGTATGGCTGAAATGGGCTTGCTTTAGATGATCCTCCTCCTTGTGACGC
ATGTGTGGCAATCATACTAGCTTTTATGGTGAAGTAATCTTTCAGCATGGAGCTATTTAT
ACATGCATTTTCCCACATGCCATGTGCAATCTTCTGATCATGCATCCTGATGATTCACGC
ATTTTGGATGTGTTAACTGTGTGAGTTATAATGAGATCCAAAACACAATGTTTCCTGAAG
TTCATCCGAGTAGGTTGGGGCCGATGGAAATTCCACCCGCATGGACATCAAAATAGCTCA
AGTTTTCCCCTGGAAACAAGTTTAAATGCTGTTTTTGATATTACAGATCTTAGTGTTGAC
TACGGGGTGGTATAAACTAGTCTGCAGTTCCTCCGTAACAGTATGGCCCAGCGATACAGC
ACAGTTTGTAACTGATCGCGGCTTTTCTGATTAAACGTGTTCTACACGTGCATCATGAGC
ACCAGCTAAGGACTTCGTACTGCATATGCATCTGTTATACTACGGGGTGGTATAAACTAG
TCTGCAGTTCCTCCGTAACAGTATGGCCCAGTGATACAGCACAGTTTGTAACTGATCGCG
GCTTTTCTGATTAAACGTGTTCTGCACGTGCATCATGAGCACCAGCTAAGGACTTTGTAT
TGCATATGCATCTGTTATTCTGTACTGGCTGCAGTTCCTGGGTGCGAACTGCAAAGTCCC
CATTTTCCTCCTTCACAGATGGCAACTATGTACCCAAGTGATGATGACACATCAACTCAA
TTTTCATTCAAGAATGTATTGTGCCATGCTAACTAAAAAAAAA

Homology of Contig U35_22875 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None