barSeed - Barley Seed Development Database

Probe CUST_8255_PI390587928

Source Contig U35_46380

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8255_PI390587928	Hv_44K_v2	ACATGACCGATATCAAGTTCCATGCTGACATGAACTTCAATATGCTTCGCTGTTGGGGTG	174	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58956.1	2768	2e-24	1860 - 1919	100	60 / 60	minus	ABC21227
MLOC	MLOC_58956.2	3472	2e-24	1835 - 1894	100	60 / 60	minus	ABC21227
MLOC	MLOC_58956.3	3390	2e-24	1835 - 1894	100	60 / 60	minus	ABC21227
JLOC1	JLOC1_38331.3	3515	8e-25	1422 - 1481	100	60 / 60	plus
JLOC1	JLOC1_38331.2	3444	8e-25	1351 - 1410	100	60 / 60	plus
JLOC1	JLOC1_38331.1	4013	8e-25	1482 - 1541	100	60 / 60	plus
Harvest21	ABC46445	234	3e-25	175 - 234	100	60 / 60	plus
Harvest35	U35_46380	234	3e-25	175 - 234	100	60 / 60	plus

Contig Sequence (234 bp)

>U35_46380 234 Hv_44K_v2
ATGGACTAAGAGAGTCCGATGCATGGAGTCATTATTTTGGGTTCCGTAAGATTGAGAGTT
CTATTGATGATTCTACTGGTGGGAGGATCTTCATGATAAATGGTGAGCCTATTTTCATCC
GAGGAGGGAACTGGATACTGTCAGATGGCCTGCTTCGACTAACAAAGAAGCGCTACATGA
CCGATATCAAGTTCCATGCTGACATGAACTTCAATATGCTTCGCTGTTGGGGTG

Homology of Contig U35_46380 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None