barSeed - Barley Seed Development Database

Probe CUST_8242_PI390587928

Source Contig U35_5303

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8242_PI390587928	Hv_44K_v2	CTCTCCCAGTAAAACTATGAACTTGTGTTGTGATAAACATACTTTTTGTGCACAAATCTG	1651	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66427.1	1910	2e-24	77 - 136	100	60 / 60	minus	None
MLOC	MLOC_66426.2	2803	2e-24	2176 - 2235	100	60 / 60	minus	ABC09318 ABC10947
JLOC1	JLOC1_43771.1	1910	8e-25	1714 - 1773	100	60 / 60	plus
Harvest21	ABC11571	1735	3e-25	1652 - 1711	100	60 / 60	plus
Harvest35	U35_5303	1735	3e-25	1652 - 1711	100	60 / 60	plus

Contig Sequence (1735 bp)

>U35_5303 1735 Hv_44K_v2
GCTCACTCTCCTCCTCTGCGCCACCTTAGCTAGCTCTCCTGCTTCCTCCCACGCTCTCGC
CGCCATGTCGTACAACAAGACCGCCTCCATCACCGCCGAGACCATAAACCCCAAGGTCAA
GATCTTCGACTACGAGCCCTGCGGGGAGATCGCCAGGCACGCAGAGCGGTTGGAGCAGGA
GATGGAGAAGAGCCCAGGTTCTCGCCCTTTCCCAGAGATTATATACTGCAACCTTGGGAA
CCCTCAGGCTCTCGGGCAGCGCCCGATAACCTTCTTTCGTGAGGTTATTTCTCTGTGTGA
CAATCCAGCTCTCCTGCACAGAGATGAAACCCGTATGTTATTCAGTCCATGTGCCATAAA
TAGAGCGCGGAAGATTATCGAGTCGATGCCCGGAAGAAACACCGGTGCATATACCAACAG
TCAGGGAATCCGAAGTTTGCGCGAAGCGGTTGCAAGTGGAATCGCTGCAAGAGATGGTTT
TCCATCAAGACCGGAAGACATCTTTCTGACGGATGGAGCGAGTTCAGCGATCAATTTGAG
TATGCAGATACTCATTAGGTCCCAAGAAGATGGCATTTTATGCCCTTTACCCGAATATCC
ATTATACTCGGCGTCCATTATACTTCATGGTGGGACTATGGTACCGTACAATCTTAGCGA
GGATGGTGATTGGGGGCTTGAGATTTTCGAAGTAAAGAGGTGCTTCGAGGAGGCACGCAT
CGCAGGTTTGACTGTTCGTGCTATGGTGATCATAAATCCCGGAAACCCAACGGGACAGGT
ACTGTCTGTCACCAACCAGGAGGAGATAGTAGAATTTTGTCGGAAAGAAGGCTTGGTTAT
CCTTGCCGATGAGGTATACCAAGATAATGTCTATGTGGAGGATAGGAAGTTCAATTCTTT
CAAGAAAGTTGCCAGATCACTTGGGTATGACGAGAATGACATCTCCATAGTGTCATTTCA
TTCGGTTTCGATGGGTTACTCTGGAGAATGTGGCAGAAGGGGAGGCTACATGGAGATATG
TGGTTTTGGAGATGATGTGATGGGTGAGATTCGCAAGGTGGCTTCTGTGACTCTTTGCCC
CAACACAAATGGTCAAATTCTTACTAGCCTTGCGATGGATCCACCAAAGCTAGGAGATGG
TTGTTTCGAGGCTTTCATGGCTGAAAAGGAAGAAATCAGTACATCTTTGGCCAAGCGCGC
CAAGACCTTGGTGAACGCATTCAGCAGCCTGGAGGGAATGACCTGCAACAAAGTAGAGGG
CGCAATCTACGCCTTCCCACGCATCCATCTCCCAGCAGCGGCGATCAAAGCCGCCAAGGC
CGAGGACGTGTCCCCAGACACGTTCTACGCGTGCCGTCTTCTCGATGCCACCGGAATCGC
GGTCGTCCCTGGCTCTGGATTCCACCAGATCTCTGGGCGCAACACGGCGACCGGGACATG
GCATATCAGGTGCACTATCCTCGTCGCCGAGGACAAGATCGAGGCAATGATCGCGCGCCT
CAAGGCCTTCCACGAGTCCTTCATGAACGAGTTCCGCGACCGAAGCTGATGCACATCTGC
AGGTCTCAACTCTGGTGGCGCTGTGTTCTTCGCTCCCTGCAAATTATGTTTGTGTTGTAC
TACCAATAAACTTTTGGGGCAGTGTGTTCTTCTCTCCCAGTAAAACTATGAACTTGTGTT
GTGATAAACATACTTTTTGTGCACAAATCTGGTATATGTATGTACTGAGTGAGTG

Homology of Contig U35_5303 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g26380.1	487	protein\|aminotransferase, classes I and II, domain containing protein, expressed
Brachypodium v1_2	Bradi4g31003.1	473
Arabidopsis v10	AT1G17290.1	543	\| Symbols: AlaAT1 \| alanine aminotransferas \| chr1:5922771-5926093 FORWARD LENGTH=543