barSeed - Barley Seed Development Database

Probe CUST_823_PI390587928

Source Contig U35_22878

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_823_PI390587928	Hv_44K_v2	CAGCGTTGTAAATTAGATTAATCTGTGTATTTTACTCAAAGGCTCCAAGCAAGTGGATAA	1022	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.040	0.068	0.550	1.896	1.622	2.375
Raw	2.642	12.215	99.359	527.653	157.726	252.457

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61209.1	6426	3e-22	5989 - 6047	98	58 / 59	plus	ABC17484
MLOC	MLOC_61209.2	646	3e-22	1 - 59	98	58 / 59	plus	None
JLOC1	JLOC1_39998.1	692	1e-22	390 - 448	98	58 / 59	plus
Harvest21	ABC17484	929	3e-25	16 - 75	100	60 / 60	minus	ABC17484
Harvest35	U35_22878	1097	3e-25	1023 - 1082	100	60 / 60	plus
Harvest35	U35_33091	373	5e-23	204 - 262	98	58 / 59	plus

Contig Sequence (1097 bp)

>U35_22878 1097 Hv_44K_v2
AGGCCATGGACGTCGCAAAAGCGGCTCCCGAGCAGTATCGCCTCACGGGAAGCCCCTCGC
CGAAGCTGCTAAAGCTGGACCCTTTTGCTGCCGATCTCTTCTAGCTAGCCTCGTGGTCGT
GGCCCTCCTCTCCCGGAGAGCCTCTCCTCTGGCCGCCCGCTCCAACGAGCCGAGGCGCCA
AAAATAAACCCGTACCTCTCCCCCCGATCCTCGTGGAGGCCGTCGATGGAGGTTGCCGCG
GCGGGAGAGCCGGCGCCCGCGGGCGAGTGGCTGGAGGAGCGCGGCGTGGACGCCGTGTAC
CTCCCACGGCTGATCGCCGGCGTCATCTCCGGCGCGCTCACCGGCCTCTTCGCTCTCGCT
GGAGCATTGACCGGAGCCGTCACCGGCGCGCTGGCGGGCAGAGCCTCCGACAGCGGCGTT
CTGCGGGGAGCTGGATTGGGAGCGATCGCCGGGGCCGTCCTCTCCATCGAGGTTCTCGAG
GCGTCTCGCGCCTACTGGTGCTCGGACCGGCTCGGCACTTCCTCCATGGCAGATTTCATA
GAGCAGCTCCTGCATGCCCGGTTTGTGCAACAGCAGCTTGGATCGTCAGCACATATGGCG
TACCGTTGGCAGCTCAGCATACCGGATTTTGGGCACGATGATGTGTACGACATCTTCGGA
GACATTTCGTCTAGAGGGCTTTCGCGAGAGGCACTGGAGAAACTACCACACTACGTGGTG
GCTGATGAGGCTCAGACTCAGGGCAAATCGGGTGAAAACCTGTCGTGTGCCATCTGTCTA
CAGGATATGGTAGCCGGTGAGACGGCGAGAAGACTACCCAATTGCTCCCATGTATTTCAT
CAGCTCTGCGTGGACAAATGGCTCAGTGGCCACGGTTCATGCCCTGTGTGTCGGCAACAT
GTGTAAAGTACACAAGTATACATTGTTTACGATCGAGTTCTCTGTTCTAGAAGGAGTTAG
TTGTGTAAAGTGTCTGCTCCTATACAATGTAGAAAGATAGAGGGAGAGAGAGTATACACA
CACAGCGTTGTAAATTAGATTAATCTGTGTATTTTACTCAAAGGCTCCAAGCAAGTGGAT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_22878 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50990.2	221	9e-82	protein\|RING-H2 finger protein ATL1Q, putative, expressed
Brachypodium v1_2	Bradi3g59496.1	220	2e-90
Arabidopsis v10	None