barSeed - Barley Seed Development Database

Probe CUST_8235_PI390587928

Source Contig U35_5310

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8235_PI390587928	Hv_44K_v2	TTAATCTTAAGGGATATCTAGTAGGTAACCCATCGACCGGTGAAAGCATTGATCTAAGCT	689	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3793.3	1887	2e-24	671 - 730	100	60 / 60	plus	ABC11714 ABC20187 ABC49802 ABC49803
MLOC	MLOC_3793.5	1399	2e-24	348 - 407	100	60 / 60	plus	ABC20187 ABC49802
MLOC	MLOC_3793.1	2037	2e-24	898 - 957	100	60 / 60	plus	ABC11714 ABC20187 ABC49802 ABC49803
MLOC	MLOC_3793.2	2074	2e-24	841 - 900	100	60 / 60	plus	ABC11714 ABC20187 ABC49802 ABC49803
MLOC	MLOC_3793.4	1662	2e-24	962 - 1021	100	60 / 60	plus	ABC11714 ABC20187 ABC49802
JLOC1	JLOC1_2284.2	2223	8e-25	898 - 957	100	60 / 60	plus
JLOC1	JLOC1_2284.1	2466	8e-25	1075 - 1134	100	60 / 60	plus
Harvest21	ABC11713	749	3e-25	690 - 749	100	60 / 60	plus
Harvest35	U35_5310	749	3e-25	690 - 749	100	60 / 60	plus

Contig Sequence (749 bp)

>U35_5310 749 Hv_44K_v2
AGACAGCTCCGGCCAAAATTAGGCCAGCAGCTGATCCGGTGCCCGTGCTCTGCTGCCGCT
CTCCGGTCCGAGGACGAGTACGGAGATGATCCCGACGCGGCTGCTCTGCTGCTGCTACTT
GCTGTCGCTCATCGCCGTCGCCCCGCGCGCGATCGACTCCAAGCTGGTGACCAGCCTCCC
CGGCTTCGACGGCCGACTCCCCTTCCGCCTCCACACCGGGTACGTGGAGGTGGACCAGGG
CACGGAGCTCTTCTACTACTTCGTCGAGTCGGAGGCCCGCGGCGAGGGGGACCCTTTCCT
CCTCTGGCTCACCGGCGGCGACCGCTGCTCCTCCTTCAGCGGCCTCGCCTACGAGATCGG
TCCCATCAGGTTCGTCCTGGAGCCCTACAATGGCAGCTTACCACGCCTGCACATCAACCC
AAACTCATGGACAAAGGTGGCACACATCCTGTTTGTCGATTCACCGGTCGGTGCTGGATT
TTCATTTTCCAAGCAACCCGAAGGGTACGAGGTCGGGGACGTGTCCTCCTCGTTGCAGCT
CCATGACTTCCTCATCAAGTGGTTCAGCGACCACCCCGAATACCTGAAAAATCCTTTCTA
TCTCGGTGGAGATTCCTATGCCGGAAAACTTGTGCCATATATCGCGCATATCATTTCACA
AGGTATTGAAGCAGGAAATAGTCCCCGCATTAATCTTAAGGGATATCTAGTAGGTAACCC
ATCGACCGGTGAAAGCATTGATCTAAGCT

Homology of Contig U35_5310 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g24374.1	394	7e-99	protein\|OsSCP55 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi2g41117.1	474	2e-133
Arabidopsis v10	AT1G33540.1	446	2e-67	\| Symbols: scpl18 \| serine carboxypeptidase-like 18 \| chr1:12162349-12164700 REVERSE LENGTH=446