barSeed - Barley Seed Development Database

Probe CUST_822_PI390587928

Source Contig U35_22879

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_822_PI390587928	Hv_44K_v2	CAAGTCTTGAGTCATGTGAATCTTGGAAATTATTTGGCTTCAAAAATACCCAGCCTTCGG	894	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366523	2304	2e-24	980 - 1039	100	60 / 60	plus	ABC16500
MLOC	MLOC_43072.2	1681	2e-24	959 - 1018	100	60 / 60	minus	ABC16500
MLOC	MLOC_43072.3	1854	2e-24	1132 - 1191	100	60 / 60	minus	ABC16500
MLOC	MLOC_43072.1	1950	2e-24	1209 - 1268	100	60 / 60	minus	ABC16500
JLOC1	JLOC1_27824.1	2107	8e-25	678 - 737	100	60 / 60	plus
Harvest21	ABC16897	957	3e-25	895 - 954	100	60 / 60	plus
Harvest35	U35_22879	957	3e-25	895 - 954	100	60 / 60	plus

Contig Sequence (957 bp)

>U35_22879 957 Hv_44K_v2
CTCGCCTCAAAACCCCCGCCCCCGCCCCCGCCCCCTAAAAACCCTAGCCCTCGAATTCTC
CCCCGCCCGCTCGGAGCGTACGGCCCGCTACACAGGCGCATGGCGTCCTCGACGGCCGCC
AACCTCTGGGTGCTGCTGGGCCTCGGCATCGCCGGCGTCCTCCTGGCGGCGAAGCGGCTC
AAGCGGCCGGCCCGCCCGGACCACGGCGCCTTCGTGTCGCGCCTCGAGCTCCTGCCGCCT
CCCCAGCCCCCGCCGCCCCAGGCACGCCACCCCCTCACCGACCTCTGCTTCGCCATCGCC
GACGCATTCCATGTCAGTGGCTATATAACAAGTTTCGGCAGCCTAGAATGGGCGAAGACA
CACGATGAAGCAACACAAACATCTCTAGTGGTTTCAACTCTTGTAGACGGTGGTGCTATT
TGTGTTGGGAAAACTGTTATTGATGAGATGGCATATAGTATCCATGGCGAGAATAAACAT
TTTGGTACACCAACAAATCCTGCAGCTTCCGATCGAGTACCTGGAGGATGCTCAAGTGGA
TCAGCTGTCGCTGTTGCTGGTGGCATGGTAGATTTCGCCTTGGGTATTGATTCCATTGGA
GGAGTAAGGGTACCAGGTGGCTATTGTGGGGTACTGGCGTTCCGTCCTTCGCATGCTGTT
ATATCCAACAGCGGTGTTATTCCTGTAGCTCCTAGCCTAGACACTATAGGCTGGTTCGCA
AGGGATCCGATTGTATTGCGTCGTGTTGGTCATCTTCTTCTGAAATTATCTTATACTGAT
ATTCGTCTACCCAGACACTTCTACATAGCAGATGATTGTTTTGAAATTTCAAAGATACCT
GCAAGAAGGTTAACTCAGGTGGTCACAAAATCTGTGGAAAAGCTGTATGGAAGACAAGTC
TTGAGTCATGTGAATCTTGGAAATTATTTGGCTTCAAAAATACCCAGCCTTCGGAAC

Homology of Contig U35_22879 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50010.1	587	1e-158	protein\|toc64, putative, expressed
Brachypodium v1_2	Bradi1g11110.1	589	1e-168
Arabidopsis v10	AT3G17970.1	589	1e-108	\| Symbols: atToc64-III, TOC64-III \| translocon at the outer membrane of chloroplasts 64-III \| chr3:6148030-6151794 FORWARD LENGTH=589