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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_8225_PI390587928Hv_44K_v2GCTGGATGGATTGTTGTGGCTATCTTTGATGTTTTCGACCTTAATTAATTTTCTCTATGT856GeneList: paleturquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 11.0066.6631.5600.6680.1370.125
Raw 529.390561.818106.76978.4152.7523.715



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_8409.19578e-25850 - 90910060 / 60plus
Harvest35U35_53209413e-25857 - 91610060 / 60plus



Contig Sequence (941 bp)

>U35_5320 941 Hv_44K_v2
GGAATTCGGGCACGAGGGTAGCTAGCTCGAACCCCTTGAGAAGGAAGCACACCAAGGTGA
CCAAGCTAGGAAGACCCTCCCGTGCATCCGACCAGCAAGTGACGGTGACGCTTGGGTGTC
CATGGACGGCAAGACGCCTCATCTGCTGCCTCTGAGTCTGAGCGCGGCGACAAAGAAGCA
GATCCGGGATGATGTCTGGCTGGTGTGTGGATGGGCGCTCATCAACGCCTTCAGCATCGT
CTTCGCCACAGCAGTCGGCCACTACATCCATCTCTCGTGCAGCCAGTCCTCCTTCATCCT
GCCGTGCATCGAGCTGACGGCCGCGGAGGAGGCCTGGCTAACCGTCCTCGGCATCGGGAT
GCTGTGCTGCGCCCCATCCGAGGCGGCCGCGGCGGCGCTGGCGCTGCTGCTCCCATGCCT
CCGTCGCCGGGCCCGCCGTGCCCTCGCCTACCTCGCGCTGGCGGTCACCGTCCTCTTCCA
TTGCATGTACGTCGGCGCCGTCTGCATCTTCCTCGCCGCCGACCCAGGATACATCTTCGG
CAGGATCTATTACACCGTCATATTCTGCGTCATCGTGGTGTGCGACCTCCTGTGCTTCCG
AGCCCTCCTGGGAGGTAACGGGTGGGGCATGCACTACGTGGATCAGCTCATGTGAGGTAC
CCATGAGAGCTGATCAGTTCTAGCTAGGGAATAACGTAGACTATGCGTTAATTCTGCTGC
GACGATTCATGGATTAGTGCCTGTCGTACGTATTTGCGAATCTAGTACTAGATGTGATGC
AGTGTTAATAACGTAGATCGACTCTAGTAATTAATTACTCCATTTGGGCAATGCGCGCTG
GCTATATAATTAGACTGCTGGATGGATTGTTGTGGCTATCTTTGATGTTTTCGACCTTAA
TTAATTTTCTCTATGTGATCGTCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_5320 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None