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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_8221_PI390587928Hv_44K_v2AACTGGCTTGTTGCTGTAATATTTTTTGGCTGAAGGGTTGCAAATTGCTGCTGTAAAAAA2036GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.0912.0151.1370.7180.2640.216
Raw 981.9051453.323723.324721.42494.14382.121



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_37430.28799e-22764 - 81810055 / 55plus ABC16471
MLOCMLOC_37430.17529e-22637 - 69110055 / 55plus ABC16471
MLOCMLOC_37430.39349e-22846 - 90010055 / 55plus ABC16471
JLOC1JLOC1_24239.26635e-22540 - 59410055 / 55plus
JLOC1JLOC1_24239.19325e-22809 - 86310055 / 55plus
Harvest35U35_532421073e-252037 - 209610060 / 60plus



Contig Sequence (2107 bp)

>U35_5324 2107 Hv_44K_v2
AGATGCGCCCAAGCCCCCTCCGTCCTTATTAAAGACCACCGCCGCCGCCGCTTTCCTTCT
ATCCAACTCCCGCGAATCCCTACCTACCTCGCGCGCCTTCGCTCGCTTGCGCCCGAACTG
CCCGCATCTCTCGCGGGCACAGACCCCCGTCCCGGTCCTTGCCTCTGCCGTTTCGTGGAA
CTTGGTGGCTAGTGGATGTCCCTGCCCTTCCCCTCCCGCGAATCCAGTTGATTCGCATCA
CCTTCGCGTCGTCAGGATCCAGTTCGTTCGCAATGTCGGCGGTGGCGCCACCGCTGTGCA
CTTGGATCGTCGCCGCCTGCTTGTCTGCAACCTGCGTCGCAGACGATGAGGGGAAGCAGC
GCAACTACATCGGCGGCGGGCTTTTCTGCACGCGCCGCCACCTTGCTGCGCGCCGCCGAG
GCGGGGCACGCTCTGGAGTGCCCATTGCTGTTTCCTTTCATCCTGAAAGAGGAGCTGTGG
AAAACAACAAATCTGAAACCAAACAACGGAGGGTAGTTGTCACTGGCATGGGTGTCGTGA
CTCCGTTAGGCCATGAGCCTGATGAGTTTTACAACAACCTTCTACAGGGTGTCAGTGGAG
TAAGTGAGATAGAAGCATTTGACTGTTCCAGCTATCCCACGAGAATTGCAGGAGAAATCA
AATCCTTCTCAACAGATGGTTGGGTTGCACCAAAGTTAGCTAAGCGAATGGATAAGTTCA
TGCAATATTTGATAGTTGCTGGTAAGAAAGCATTGGACAATGGTGGAGTCACTGAAGATA
TCATGAACGAGTTGGACAAATCGAGATGTGGAGTTCTAATTGGATCTGGTATGGGTGGCA
TGAAGGTTTTTAGTGATGCAATTGAAGCATTGAGGGTCTCCTACAGGAAGATGAACCCAT
TTTGTGTACCTTTTGCAACTACAAACATGGGCTCTGCAGTACTTGCGATGGATTTGGGCT
GGATGGGCCCAAACTACTCCATCTCTACTGCTTGCGCCACTAGTAACTTCTGCATTCTGA
GTGCAGCTAATCATATCATGAGGGGGGAAACTGATTTGATGCTTTGTGGTGGTTCTGATG
CTCCCATTATACCAATTGGATTGGGAGGTTTTGTGGCATGTAGAGCTCTTTCACAGAGAA
ATAGTGATCCAACAAAAGCTTCTCGGCCTTGGGATGTGGATCGTGATGGGTTTGTCATGG
GAGAAGGGGCTGGTGTGCTTCTTTTGGAAGAACTTGAGCATGCAAAGCAAAGAGGTGCAG
AAATATATGCCGAATTTCTGGGTGGAAACTTTACGTGCGATGCATATCATATGACGGAAC
CACATCCTGAAGGGAAGGGGGTTATTCTTTGTGTCGAAAATGCACTAGCTGATGCAGGAG
TAACAAGGCAAGACATTAACTACGTAAATGCCCATGCTACATCTACACAGTTGGGCGATT
TGAAGGAATTCGAAGCTCTTCGCCGCTGTTTTGGCCAGAATCCTCAGCTAAGAGTAAACT
CAACAAAGTCGATGACTGGCCACTTGCTAGGTGCTGCAGGTGGAATAGAAGCTGTAGCTG
CTATACAAGCTATAAGAACTGGTTGGATCCATCCGAATATCAATCTAAACAATCCGGAGA
AAAATGTGGATGTCAGCTTGCTGGTGGGATCACAAAAGGAGAGATGTGACGTGAAAGTTG
CGTTGTCGAATTCATTTGGATTCGGTGGGCACAATTCATCAATTTTATTTGCACCCTTTT
GAGCTCTGTTGGTGTGCTAGCTTATGGGTACGATTGTGTCGTGGAACCGGAATTTTGACA
AAGCTCACTCAGTAGAATATATTGCTACATAGGTGAGCAAAGAAATCAATTAAGTTTCTT
TTGTATTGCAAAATCAAATATATCCCATGCAAGTTAATCCAGATGTTGCACATGCACATA
AGTCCATCTTATTTTTGTACCAGATGTTATTGGATTAGTCGTGTGGGAACTTTACTGGGG
CCACTATGTTTTTATCTTGCTGTTTTACCAGGCAGATATAATGCTTGCTGATGCAAAACT
GGCTTGTTGCTGTAATATTTTTTGGCTGAAGGGTTGCAAATTGCTGCTGTAAAAAAAAAA
AAAAAAA



Homology of Contig U35_5324 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g28420.14990.0protein|3-oxoacyl-synthase, putative, expressed
Brachypodium v1_2Bradi1g60300.14920.0
Arabidopsis v10AT1G74960.25410.0| Symbols: FAB1, KAS2 | fatty acid biosynthesis 1 | chr1:28152564-28155948 REVERSE LENGTH=541