barSeed - Barley Seed Development Database

Probe CUST_8220_PI390587928

Source Contig U35_5325

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8220_PI390587928	Hv_44K_v2	TAGTACTAACTTCACCGTGCTAGTACCAACTTCACCGAGCAACTGCTAGGATTCTAATAT	396	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37430.2	879	2e-24	233 - 292	100	60 / 60	plus	ABC16471
MLOC	MLOC_37430.1	752	2e-24	106 - 165	100	60 / 60	plus	ABC16471
MLOC	MLOC_37430.3	934	2e-24	221 - 280	100	60 / 60	plus	ABC16471
JLOC1	JLOC1_24239.2	663	8e-25	188 - 247	100	60 / 60	plus
JLOC1	JLOC1_24239.1	932	8e-25	389 - 448	100	60 / 60	plus
Harvest21	ABC23583	545	3e-25	397 - 456	100	60 / 60	plus
Harvest35	U35_5325	548	3e-25	397 - 456	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_5325 548 Hv_44K_v2
ATTTTTAGGCATCACATTCATCAATTAAACCAAATCTTCAAGGACTTCCACCTGTGTATA
CTCACAAACACATTAGTTCCTTAACCACTTTTGTCATCAATGCTCCAAAACCACAAAAGG
GGCACCAGATGCACTTTTACCAAGGAGAATCAAGTAACAACTACCTTTTATTCATTCAAA
GGCCTGCAGATACTCAGGTAAGTAACCCACAACAGGTGTTCATTACTCGTTGTGCTAGTA
CTAACTTTTGTCATCAATACTCCAAAACCACAAAGGGGGCACTAGATGCACTTGCATTTA
CCAAGAAGAATCAAGTAACAACCACCTTTTATTCATTCAAAGGCCTGCAGATACTCAGAC
AAGTAACCCACAACAGGTGTTCATCACTCGTTGTGCTAGTACTAACTTCACCGTGCTAGT
ACCAACTTCACCGAGCAACTGCTAGGATTCTAATATAAAGCTATAAGAACTGGTTGGATC
CATCCGAATATCAATCTAAACAATCCGGAGAAAAATGTGGATGTCAGCTTGCTGGTGGGA
TCACAAAA

Homology of Contig U35_5325 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None