- Probe CUST_8219_PI390587928
- Source Contig U35_5326
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8219_PI390587928 | Hv_44K_v2 | TCATGTATTTGAGGGTTTTGCACAGCCTGTTATATGTACACATCAGCAATGGATTCTGAT | 1199 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.678 | 3.622 | 1.474 | 0.654 | 0.331 | 0.292 |
| Raw | 78.163 | 123.407 | 42.296 | 30.967 | 3.690 | 3.351 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6919.8 | 3105 | 2e-24 | 3038 - 3097 | 100 | 60 / 60 | plus | ABC12070 ABC21816 |
| MLOC | MLOC_6919.11 | 3985 | 2e-24 | 3587 - 3646 | 100 | 60 / 60 | plus | ABC12070 |
| MLOC | MLOC_6919.5 | 3190 | 2e-24 | 2792 - 2851 | 100 | 60 / 60 | plus | ABC12070 ABC21816 |
| MLOC | MLOC_6919.3 | 3242 | 2e-24 | 2844 - 2903 | 100 | 60 / 60 | plus | ABC12070 |
| MLOC | MLOC_6919.6 | 2239 | 2e-24 | 1840 - 1899 | 100 | 60 / 60 | plus | ABC12070 ABC21816 |
| MLOC | MLOC_6919.7 | 3723 | 2e-24 | 3324 - 3383 | 100 | 60 / 60 | plus | ABC12070 ABC21816 |
| MLOC | MLOC_6919.14 | 1362 | 2e-24 | 1293 - 1352 | 100 | 60 / 60 | plus | ABC12070 |
| MLOC | MLOC_6919.15 | 2821 | 2e-24 | 2423 - 2482 | 100 | 60 / 60 | plus | ABC12070 |
| JLOC1 | JLOC1_4552.2 | 3234 | 8e-25 | 2543 - 2602 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_4552.1 | 3732 | 8e-25 | 3041 - 3100 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_4551.6 | 2729 | 8e-25 | 1982 - 2041 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4551.5 | 3945 | 8e-25 | 3198 - 3257 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4551.4 | 2742 | 8e-25 | 1995 - 2054 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4551.3 | 3368 | 8e-25 | 2621 - 2680 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4551.2 | 3083 | 8e-25 | 2336 - 2395 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4551.1 | 3822 | 8e-25 | 3075 - 3134 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12070 | 1284 | 3e-25 | 1200 - 1259 | 100 | 60 / 60 | plus | ABC12070 |
| Harvest35 | U35_5326 | 1284 | 3e-25 | 1200 - 1259 | 100 | 60 / 60 | plus |
Contig Sequence (1284 bp)
>U35_5326 1284 Hv_44K_v2 AACCATCCAAGCACAGAAACAGCTAAAACTAGTTTCAGGATGGCTACAGCTGCATTGTGC TTCAGGGCGTCTGCTCTCTCCATGGCCTGTTTTCTCCTGGCCGTGCCATTGTTGATGGCA CAGGACCCTTCGAACCTGAGCCTGGAGCACTACTCCAAGACATGCCCGAATGCGGAGCAT GTGGTCCGTGCCGAGATGGAGTGCGCGGTGCGTGACGAACCACGCAATGCCGCTTTGATG CTCCGCCTCCATTTTCACGACTGTTTTGTGCAGGGCTGTGATGGATCGGTGCTGCTTGAC GACACTGCAACCATGATCGGAGAGAAGCAGGCAGACCAGAATGTGAACTCGCTGAAAGGA TTTGAGGTGGTTGACAAAATCAAGGCAAAGCTGGAAGCTGAGTGTCCTGGAACAGTTTCC TGTGCTGACTTGCTTGCCATTGCAGCCAGGGACGCAGTTGTCTTGGTTGGTGGGCCTTAC TGGGATGTTCCAGTAGGAAGATTGGACTCCAAGGAGGCAAGTCTTGACCTAGCAAACAAG GATATCCCCACCGCTGAGCAGGGTCTCGTCACCCTTATTTCCAAGTTTTGGGAGAAGGGC CTTGATGCCACTGACATGGTGGCCCTTGTCGGATCCCACACGATTGGATTCGCCCGGTGT GCGAACTTCCGGGACAGGATATACGGCGACTTCGAGATGACATCCAAGTACAACCCTGCT TCTGCGACCTACCTCAGCAAGCTCAAGGAGATCTGCCCCATGGATGGTGGCGATGACAAC ATCAGCGCCATGGACAGCCACACTTCGTCGACCTTCGACAACGCCTATTTTGAGACGCTC ATCAAGGGCGAGGGCCTCCTCAACTCTGACCAGGAGATGTGGTCCAGCATCGCCGGGTAC TCAACGGCTGACACGGTCAACAAGTATTGGGCTGACCCTGCGCTGTTCTTCAAGCAGTTT TCGGACTCCATGGTCAAGATGGGCAACATCACCAACCCTGCAGGTGGTGAGGTCAGGAAG ACCTGCAGATTCGTGAACACATAAGCTCAAGGGACCTTTGTTTGCGCCTTCTCCTTTGAT GGTTGATGATTGTCTGCAAATAAGAACGTTTTTCATAGTATATACTCTACTGTATAGGTA TTATCGTCGTCGCGCTACACAAAAATATTTTGGCTGTATGGAGTAATGGAGAATATATAT CATGTATTTGAGGGTTTTGCACAGCCTGTTATATGTACACATCAGCAATGGATTCTGATC AGATTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_5326 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g16350.1 | 335 | 0.0 | protein|peroxidase precursor, putative, expressed |
| Brachypodium v1_2 | Bradi1g43680.1 | 335 | 0.0 | |
| Arabidopsis v10 | AT1G68850.1 | 336 | 4e-137 | Peroxidase superfamily protein | chr1:25883806-25885177 REVERSE LENGTH=336 |