barSeed - Barley Seed Development Database

Probe CUST_8218_PI390587928

Source Contig U35_5327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8218_PI390587928	Hv_44K_v2	ATGATAAGAAGATCAACTCGGGTGATCTTGTCCTCATGGATGTTGGATGTGAGTACCATG	983	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.981	1.079	2.167	2.217	0.781	0.770
Raw	97.257	166.557	295.455	473.758	57.926	61.979

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250022.1	1870	2e-24	961 - 1020	100	60 / 60	plus	ABC16134
MLOC	MLOC_64635.1	2499	2e-24	843 - 902	100	60 / 60	minus	ABC16134
MLOC	MLOC_64635.2	2591	2e-24	843 - 902	100	60 / 60	minus	ABC16134
JLOC1	JLOC1_42467.2	1947	8e-25	1034 - 1093	100	60 / 60	plus
JLOC1	JLOC1_42467.1	1551	8e-25	638 - 697	100	60 / 60	plus
Harvest21	ABC11457	1043	3e-25	984 - 1043	100	60 / 60	plus
Harvest35	U35_5327	1043	3e-25	984 - 1043	100	60 / 60	plus

Contig Sequence (1043 bp)

>U35_5327 1043 Hv_44K_v2
CTTTCCCGTCCCTTCTGGACGGCTAGGATCACCGCAGAGTCCCAGGTTAGGGTCTCCGGG
AAGGCTGGCGGAGGGGCGAAGAAGAATCAGGAGAGGGAGCTGCATGGCGACGGCGGCGCG
ATTCTTGCGAAGGACGCTGCGAGCAAGCGAGGGGGCGTCTCGCTTGTTATCTACCTCTCA
CAGTATAATTAGGCGTGTTGCATACACTACCGGAGGAATAATTGATGTTGGCCAGCCAAC
ACCCAGATCTCATCCCGAGTTATTAGCTGATGAGGAGATTACACCAGGCATCACAAGTGA
GGAGTACATATGTAGAAGAAAAAAGCTTCTGGATGCTTTACCAGATAAGAGCTTGGCCAT
AATTGCATCTGCAGATCAGCAGATGATGACTGATATAGTGCCGTACTCCTTCAGACAGAA
TGGTGATTACCTGTACATTACAGGTTGTACGCAACCTGGTGGTGTAGCAGTTTTAAGTAA
GGAAACTGGTTTATGTATGTTCATGCCAGATAAACACAAGGAGGATGTAGTTTGGGAAGG
TCCGACTGCTGGAGTTGAAGCAGCTGTCGATTTCTTCAAGGCAGATAAAGCATTTCCACT
TAGTGAAATGAAAAAGATCCTCCCCGAAATGATTGAGCAATCAAAAGTGGTGTATCACAA
TGTAAAGGCATCCACATCTTCTTATAGGAACTTTGATGCCTTCCGCAGGGCATCACTCAA
CAATAAAGTAAAAGATCTTGCACATTACACTGATGAACTGCGGTGGATCAAGTCAAAATC
GGAAATCAAGTTGATGAGGGAGTCAGCATCTATTGTTTCTCAGTCTCTTTTGCAGACAAT
GTTGCTCTCAAGGACCCACAGGGAGGAAAGCCAGTTAGCTGCTAAAATAGAGTATGAGTG
CAAAATGAGAGGTGCCCAAAGAATGGCGTTCCATCCTGTAGTTGGTGGTGGAGCAAATGG
CAGTGTTGTACATTACTCAAGAAATGATAAGAAGATCAACTCGGGTGATCTTGTCCTCAT
GGATGTTGGATGTGAGTACCATG

Homology of Contig U35_5327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g37640.2	421	2e-165	protein\|xaa-Pro aminopeptidase, putative, expressed
Brachypodium v1_2	Bradi4g04580.1	501	3e-180
Arabidopsis v10	AT1G09300.1	493	2e-112	Metallopeptidase M24 family protein \| chr1:3003981-3008131 FORWARD LENGTH=493